Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.08■□□□□ 0.8
COL5A1P20908 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.08■□□□□ 0.8
COL5A1P20908 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.08■□□□□ 0.8
COL5A1P20908 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
COL5A1P20908 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
COL5A1P20908 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
COL5A1P20908 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
COL5A1P20908 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
COL5A1P20908 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A1P20908 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A1P20908 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A1P20908 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A1P20908 KRT18P68-201ENST00000392293 1000 ntBASIC20.07■□□□□ 0.8
COL5A1P20908 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.07■□□□□ 0.8
COL5A1P20908 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.07■□□□□ 0.8
COL5A1P20908 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.07■□□□□ 0.8
COL5A1P20908 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.07■□□□□ 0.8
COL5A1P20908 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
COL5A1P20908 GUSBP5-202ENST00000510805 1989 ntBASIC20.07■□□□□ 0.8
COL5A1P20908 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.07■□□□□ 0.8
COL5A1P20908 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A1P20908 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.07■□□□□ 0.8
COL5A1P20908 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
COL5A1P20908 AC242852.2-201ENST00000615738 1807 ntBASIC20.07■□□□□ 0.8
COL5A1P20908 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.06■□□□□ 0.8
COL5A1P20908 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 RN7SL471P-201ENST00000580476 299 ntBASIC20.06■□□□□ 0.8
COL5A1P20908 LINC01023-201ENST00000606054 436 ntBASIC20.06■□□□□ 0.8
COL5A1P20908 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 CYP21A1P-202ENST00000354927 1481 ntBASIC20.06■□□□□ 0.8
COL5A1P20908 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.06■□□□□ 0.8
COL5A1P20908 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
COL5A1P20908 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.06■□□□□ 0.8
COL5A1P20908 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.06■□□□□ 0.8
COL5A1P20908 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.06■□□□□ 0.8
COL5A1P20908 SNORA78-201ENST00000459373 127 ntBASIC20.06■□□□□ 0.8
COL5A1P20908 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.06■□□□□ 0.8
COL5A1P20908 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.06■□□□□ 0.8
COL5A1P20908 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL5A1P20908 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.06■□□□□ 0.8
COL5A1P20908 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A1P20908 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
COL5A1P20908 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A1P20908 AC087633.2-202ENST00000565166 1439 ntBASIC20.05■□□□□ 0.8
COL5A1P20908 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
COL5A1P20908 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A1P20908 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A1P20908 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A1P20908 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A1P20908 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
COL5A1P20908 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A1P20908 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
COL5A1P20908 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A1P20908 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
COL5A1P20908 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A1P20908 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A1P20908 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A1P20908 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A1P20908 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A1P20908 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.04■□□□□ 0.8
COL5A1P20908 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL5A1P20908 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
COL5A1P20908 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
COL5A1P20908 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A1P20908 AC092053.2-201ENST00000640557 1818 ntBASIC20.04■□□□□ 0.8
COL5A1P20908 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.04■□□□□ 0.8
COL5A1P20908 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.04■□□□□ 0.8
COL5A1P20908 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A1P20908 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A1P20908 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A1P20908 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A1P20908 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL5A1P20908 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.04■□□□□ 0.8
COL5A1P20908 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
COL5A1P20908 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A1P20908 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
COL5A1P20908 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL5A1P20908 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL5A1P20908 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
COL5A1P20908 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
COL5A1P20908 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.03■□□□□ 0.8
COL5A1P20908 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.03■□□□□ 0.8
COL5A1P20908 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.03■□□□□ 0.8
COL5A1P20908 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms