Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA1O95477 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA1O95477 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
ABCA1O95477 MIR718-201ENST00000390190 70 ntBASIC17.34■□□□□ 0.37
ABCA1O95477 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.34■□□□□ 0.37
ABCA1O95477 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.34■□□□□ 0.37
ABCA1O95477 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.34■□□□□ 0.37
ABCA1O95477 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA1O95477 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA1O95477 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA1O95477 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA1O95477 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
ABCA1O95477 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA1O95477 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
ABCA1O95477 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
ABCA1O95477 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ABCA1O95477 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.33■□□□□ 0.37
ABCA1O95477 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.33■□□□□ 0.37
ABCA1O95477 AC008403.3-201ENST00000598924 454 ntBASIC17.33■□□□□ 0.37
ABCA1O95477 AC073912.3-201ENST00000624414 853 ntBASIC17.33■□□□□ 0.37
ABCA1O95477 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.33■□□□□ 0.37
ABCA1O95477 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
ABCA1O95477 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ABCA1O95477 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ABCA1O95477 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ABCA1O95477 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.33■□□□□ 0.37
ABCA1O95477 KRT17P1-201ENST00000399211 1546 ntBASIC17.33■□□□□ 0.37
ABCA1O95477 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
ABCA1O95477 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA1O95477 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
ABCA1O95477 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA1O95477 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA1O95477 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA1O95477 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA1O95477 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA1O95477 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
ABCA1O95477 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA1O95477 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.33■□□□□ 0.36
ABCA1O95477 MIR4497-201ENST00000583208 89 ntBASIC17.33■□□□□ 0.36
ABCA1O95477 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
ABCA1O95477 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
ABCA1O95477 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA1O95477 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
ABCA1O95477 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.33■□□□□ 0.36
ABCA1O95477 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA1O95477 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
ABCA1O95477 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.32■□□□□ 0.36
ABCA1O95477 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA1O95477 AC012618.2-201ENST00000428058 849 ntBASIC17.32■□□□□ 0.36
ABCA1O95477 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
ABCA1O95477 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
ABCA1O95477 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
ABCA1O95477 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA1O95477 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.32■□□□□ 0.36
ABCA1O95477 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA1O95477 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.32■□□□□ 0.36
ABCA1O95477 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA1O95477 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.32■□□□□ 0.36
ABCA1O95477 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.32■□□□□ 0.36
ABCA1O95477 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.32■□□□□ 0.36
ABCA1O95477 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA1O95477 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA1O95477 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
ABCA1O95477 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA1O95477 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA1O95477 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.31■□□□□ 0.36
ABCA1O95477 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.31■□□□□ 0.36
ABCA1O95477 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA1O95477 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA1O95477 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA1O95477 AC137767.1-201ENST00000602918 1920 ntBASIC17.31■□□□□ 0.36
ABCA1O95477 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA1O95477 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA1O95477 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.31■□□□□ 0.36
ABCA1O95477 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.31■□□□□ 0.36
ABCA1O95477 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.31■□□□□ 0.36
ABCA1O95477 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA1O95477 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA1O95477 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.31■□□□□ 0.36
ABCA1O95477 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
ABCA1O95477 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.3■□□□□ 0.36
ABCA1O95477 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA1O95477 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
ABCA1O95477 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA1O95477 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ABCA1O95477 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA1O95477 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.3■□□□□ 0.36
ABCA1O95477 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA1O95477 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA1O95477 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.3■□□□□ 0.36
ABCA1O95477 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.3■□□□□ 0.36
ABCA1O95477 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA1O95477 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA1O95477 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA1O95477 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
ABCA1O95477 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA1O95477 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA1O95477 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
ABCA1O95477 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.3■□□□□ 0.36
ABCA1O95477 AC211429.1-201ENST00000415277 523 ntBASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms