Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.45■□□□□ 0.86
SNX3O60493 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SNX3O60493 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SNX3O60493 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SNX3O60493 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SNX3O60493 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SNX3O60493 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SNX3O60493 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SNX3O60493 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SNX3O60493 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SNX3O60493 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SNX3O60493 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SNX3O60493 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SNX3O60493 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SNX3O60493 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SNX3O60493 AC087239.1-201ENST00000622671 572 ntBASIC20.44■□□□□ 0.86
SNX3O60493 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SNX3O60493 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
SNX3O60493 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SNX3O60493 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SNX3O60493 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SNX3O60493 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SNX3O60493 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.43■□□□□ 0.86
SNX3O60493 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SNX3O60493 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SNX3O60493 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SNX3O60493 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SNX3O60493 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
SNX3O60493 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SNX3O60493 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.43■□□□□ 0.86
SNX3O60493 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.43■□□□□ 0.86
SNX3O60493 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.43■□□□□ 0.86
SNX3O60493 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
SNX3O60493 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SNX3O60493 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.43■□□□□ 0.86
SNX3O60493 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SNX3O60493 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SNX3O60493 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SNX3O60493 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SNX3O60493 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SNX3O60493 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SNX3O60493 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.42■□□□□ 0.86
SNX3O60493 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
SNX3O60493 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SNX3O60493 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
SNX3O60493 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SNX3O60493 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SNX3O60493 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.42■□□□□ 0.86
SNX3O60493 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.42■□□□□ 0.86
SNX3O60493 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SNX3O60493 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SNX3O60493 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SNX3O60493 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SNX3O60493 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.41■□□□□ 0.86
SNX3O60493 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.41■□□□□ 0.86
SNX3O60493 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.41■□□□□ 0.86
SNX3O60493 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SNX3O60493 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.41■□□□□ 0.86
SNX3O60493 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SNX3O60493 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.41■□□□□ 0.86
SNX3O60493 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SNX3O60493 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
SNX3O60493 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.41■□□□□ 0.86
SNX3O60493 AC103724.3-201ENST00000564481 992 ntBASIC20.41■□□□□ 0.86
SNX3O60493 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.41■□□□□ 0.86
SNX3O60493 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SNX3O60493 AP006587.3-201ENST00000525742 1516 ntBASIC20.41■□□□□ 0.86
SNX3O60493 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SNX3O60493 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SNX3O60493 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.41■□□□□ 0.86
SNX3O60493 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SNX3O60493 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SNX3O60493 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.41■□□□□ 0.86
SNX3O60493 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SNX3O60493 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
SNX3O60493 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SNX3O60493 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SNX3O60493 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SNX3O60493 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SNX3O60493 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SNX3O60493 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SNX3O60493 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SNX3O60493 AC103834.1-201ENST00000520383 144 ntBASIC20.4■□□□□ 0.86
SNX3O60493 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SNX3O60493 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.4■□□□□ 0.86
SNX3O60493 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SNX3O60493 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.4■□□□□ 0.86
SNX3O60493 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.4■□□□□ 0.86
SNX3O60493 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SNX3O60493 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SNX3O60493 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SNX3O60493 ATP5G2P3-201ENST00000429083 425 ntBASIC20.39■□□□□ 0.85
SNX3O60493 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.39■□□□□ 0.85
SNX3O60493 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
SNX3O60493 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.39■□□□□ 0.85
SNX3O60493 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SNX3O60493 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SNX3O60493 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SNX3O60493 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.39■□□□□ 0.85
SNX3O60493 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms