Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS9D1Q9Y2B5 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 AC004854.2-201ENST00000608450 1441 ntBASIC20.61■□□□□ 0.89
VPS9D1Q9Y2B5 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 AC011484.1-201ENST00000377652 1995 ntBASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 SLC7A5P1-201ENST00000568957 537 ntBASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS9D1Q9Y2B5 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS9D1Q9Y2B5 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 PLK5-205ENST00000642079 1969 ntBASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 AC097381.1-201ENST00000429019 1296 ntBASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.58■□□□□ 0.89
VPS9D1Q9Y2B5 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS9D1Q9Y2B5 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.58■□□□□ 0.88
VPS9D1Q9Y2B5 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS9D1Q9Y2B5 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VPS9D1Q9Y2B5 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS9D1Q9Y2B5 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 235.1 ms