Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
DDX41Q9UJV9 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
DDX41Q9UJV9 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
DDX41Q9UJV9 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC23.87■■□□□ 1.41
DDX41Q9UJV9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
DDX41Q9UJV9 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
DDX41Q9UJV9 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
DDX41Q9UJV9 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.86■■□□□ 1.41
DDX41Q9UJV9 POU5F1P4-201ENST00000413175 1085 ntBASIC23.86■■□□□ 1.41
DDX41Q9UJV9 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.86■■□□□ 1.41
DDX41Q9UJV9 AC007322.4-201ENST00000509611 723 ntBASIC23.86■■□□□ 1.41
DDX41Q9UJV9 AC105036.2-201ENST00000569468 176 ntBASIC23.86■■□□□ 1.41
DDX41Q9UJV9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
DDX41Q9UJV9 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
DDX41Q9UJV9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.86■■□□□ 1.41
DDX41Q9UJV9 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
DDX41Q9UJV9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
DDX41Q9UJV9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 AC092053.2-201ENST00000640557 1818 ntBASIC23.85■■□□□ 1.41
DDX41Q9UJV9 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 SLC29A4P1-201ENST00000398760 971 ntBASIC23.85■■□□□ 1.41
DDX41Q9UJV9 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 AC003102.1-202ENST00000563394 1796 ntBASIC23.85■■□□□ 1.41
DDX41Q9UJV9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
DDX41Q9UJV9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 AC026310.3-201ENST00000625186 2373 ntBASIC23.84■■□□□ 1.41
DDX41Q9UJV9 AC080038.3-201ENST00000623346 1952 ntBASIC23.84■■□□□ 1.41
DDX41Q9UJV9 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 AC120498.10-201ENST00000621827 505 ntBASIC23.84■■□□□ 1.41
DDX41Q9UJV9 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
DDX41Q9UJV9 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
DDX41Q9UJV9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23.83■■□□□ 1.41
DDX41Q9UJV9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
DDX41Q9UJV9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
DDX41Q9UJV9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
DDX41Q9UJV9 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
DDX41Q9UJV9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
DDX41Q9UJV9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
DDX41Q9UJV9 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC23.83■■□□□ 1.4
DDX41Q9UJV9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.83■■□□□ 1.4
DDX41Q9UJV9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 CYP2T1P-201ENST00000432607 1285 ntBASIC23.82■■□□□ 1.4
DDX41Q9UJV9 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX41Q9UJV9 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
DDX41Q9UJV9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms