Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.63■■□□□ 1.05
DDX56Q9NY93 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.63■■□□□ 1.05
DDX56Q9NY93 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.63■■□□□ 1.05
DDX56Q9NY93 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX56Q9NY93 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
DDX56Q9NY93 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
DDX56Q9NY93 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX56Q9NY93 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.62■■□□□ 1.05
DDX56Q9NY93 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.62■■□□□ 1.05
DDX56Q9NY93 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX56Q9NY93 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX56Q9NY93 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX56Q9NY93 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.62■■□□□ 1.05
DDX56Q9NY93 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
DDX56Q9NY93 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.62■■□□□ 1.05
DDX56Q9NY93 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX56Q9NY93 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
DDX56Q9NY93 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX56Q9NY93 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX56Q9NY93 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX56Q9NY93 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.61■■□□□ 1.05
DDX56Q9NY93 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
DDX56Q9NY93 AC123595.1-201ENST00000440769 1046 ntBASIC21.61■■□□□ 1.05
DDX56Q9NY93 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.61■■□□□ 1.05
DDX56Q9NY93 AC120498.10-201ENST00000621827 505 ntBASIC21.61■■□□□ 1.05
DDX56Q9NY93 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
DDX56Q9NY93 AC011484.1-201ENST00000377652 1995 ntBASIC21.61■■□□□ 1.05
DDX56Q9NY93 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX56Q9NY93 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX56Q9NY93 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
DDX56Q9NY93 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX56Q9NY93 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.6■■□□□ 1.05
DDX56Q9NY93 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX56Q9NY93 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
DDX56Q9NY93 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX56Q9NY93 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX56Q9NY93 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX56Q9NY93 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX56Q9NY93 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX56Q9NY93 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.6■■□□□ 1.05
DDX56Q9NY93 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.6■■□□□ 1.05
DDX56Q9NY93 LINC01006-201ENST00000333319 2292 ntBASIC21.6■■□□□ 1.05
DDX56Q9NY93 KRT16P2-201ENST00000414673 1423 ntBASIC21.6■■□□□ 1.05
DDX56Q9NY93 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
DDX56Q9NY93 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX56Q9NY93 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.6■■□□□ 1.05
DDX56Q9NY93 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
DDX56Q9NY93 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
DDX56Q9NY93 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.6■■□□□ 1.05
DDX56Q9NY93 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
DDX56Q9NY93 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.59■■□□□ 1.05
DDX56Q9NY93 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
DDX56Q9NY93 AC010141.2-201ENST00000452426 721 ntBASIC21.59■■□□□ 1.05
DDX56Q9NY93 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.59■■□□□ 1.05
DDX56Q9NY93 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.59■■□□□ 1.05
DDX56Q9NY93 GABARAPL3-202ENST00000624044 1851 ntBASIC21.59■■□□□ 1.05
DDX56Q9NY93 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
DDX56Q9NY93 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 AC007225.1-201ENST00000566331 1836 ntBASIC21.59■■□□□ 1.05
DDX56Q9NY93 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.59■■□□□ 1.05
DDX56Q9NY93 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
DDX56Q9NY93 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX56Q9NY93 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
DDX56Q9NY93 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.58■■□□□ 1.05
DDX56Q9NY93 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
DDX56Q9NY93 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
DDX56Q9NY93 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
DDX56Q9NY93 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.58■■□□□ 1.05
DDX56Q9NY93 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
DDX56Q9NY93 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.58■■□□□ 1.05
DDX56Q9NY93 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.58■■□□□ 1.05
DDX56Q9NY93 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
DDX56Q9NY93 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
DDX56Q9NY93 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
DDX56Q9NY93 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
DDX56Q9NY93 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
DDX56Q9NY93 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
DDX56Q9NY93 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX56Q9NY93 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
DDX56Q9NY93 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX56Q9NY93 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.57■■□□□ 1.04
DDX56Q9NY93 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX56Q9NY93 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms