Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
EBF3Q9H4W6 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
EBF3Q9H4W6 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.65■■□□□ 1.06
EBF3Q9H4W6 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
EBF3Q9H4W6 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.65■■□□□ 1.06
EBF3Q9H4W6 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.65■■□□□ 1.06
EBF3Q9H4W6 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.65■■□□□ 1.06
EBF3Q9H4W6 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.65■■□□□ 1.06
EBF3Q9H4W6 AC010980.2-201ENST00000587099 1412 ntBASIC21.64■■□□□ 1.06
EBF3Q9H4W6 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
EBF3Q9H4W6 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 AL162412.1-201ENST00000567129 965 ntBASIC21.64■■□□□ 1.05
EBF3Q9H4W6 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.64■■□□□ 1.05
EBF3Q9H4W6 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 AC080038.3-201ENST00000623346 1952 ntBASIC21.63■■□□□ 1.05
EBF3Q9H4W6 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 RARRES2P4-201ENST00000514074 484 ntBASIC21.63■■□□□ 1.05
EBF3Q9H4W6 AC008687.6-201ENST00000596318 630 ntBASIC21.63■■□□□ 1.05
EBF3Q9H4W6 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 AC083880.1-201ENST00000608266 535 ntBASIC21.63■■□□□ 1.05
EBF3Q9H4W6 AC243732.1-201ENST00000612648 864 ntBASIC21.63■■□□□ 1.05
EBF3Q9H4W6 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
EBF3Q9H4W6 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
EBF3Q9H4W6 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 AC026471.6-201ENST00000622954 1905 ntBASIC21.61■■□□□ 1.05
EBF3Q9H4W6 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 AC097658.1-201ENST00000475555 843 ntBASIC21.61■■□□□ 1.05
EBF3Q9H4W6 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.61■■□□□ 1.05
EBF3Q9H4W6 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 KRT18P29-201ENST00000397031 1267 ntBASIC21.6■■□□□ 1.05
EBF3Q9H4W6 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 ITM2C-210ENST00000620962 501 ntBASIC21.6■■□□□ 1.05
EBF3Q9H4W6 MYC-209ENST00000641252 345 ntBASIC21.6■■□□□ 1.05
EBF3Q9H4W6 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
EBF3Q9H4W6 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.59■■□□□ 1.05
EBF3Q9H4W6 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
EBF3Q9H4W6 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
EBF3Q9H4W6 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms