Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 AC012414.1-201ENST00000556676 535 ntBASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.92■□□□□ 0.78
CLHC1Q8NHS4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 AL139246.5-201ENST00000606645 996 ntBASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.91■□□□□ 0.78
CLHC1Q8NHS4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 AC121338.2-201ENST00000622535 1744 ntBASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 AC142381.2-201ENST00000566120 298 ntBASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLHC1Q8NHS4 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
CLHC1Q8NHS4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 AC073314.1-201ENST00000568729 2216 ntBASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 TPRG1LP1-201ENST00000598702 760 ntBASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CLHC1Q8NHS4 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 AC061975.6-201ENST00000579045 1553 ntBASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLHC1Q8NHS4 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 EEF1DP3-203ENST00000566025 782 ntBASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 AL354811.1-201ENST00000610286 706 ntBASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms