Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CLRN3Q8NCR9 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.25
CLRN3Q8NCR9 MIR3648-2-201ENST00000581792 180 ntBASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 MIR3648-1-201ENST00000615959 180 ntBASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN3Q8NCR9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 KRT18P10-201ENST00000388836 1287 ntBASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN3Q8NCR9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 AC006128.1-201ENST00000624704 1661 ntBASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC16.56■□□□□ 0.24
CLRN3Q8NCR9 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 AC131274.2-201ENST00000580697 1507 ntBASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 STK32C-205ENST00000456004 607 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN3Q8NCR9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms