Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BEST3Q8N1M1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 C11orf96-202ENST00000528572 1834 ntBASIC19.28■□□□□ 0.68
BEST3Q8N1M1 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 AC069152.1-201ENST00000438030 544 ntBASIC19.28■□□□□ 0.68
BEST3Q8N1M1 AC098934.4-201ENST00000564127 592 ntBASIC19.28■□□□□ 0.68
BEST3Q8N1M1 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BEST3Q8N1M1 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 AL591742.1-201ENST00000604433 565 ntBASIC19.27■□□□□ 0.68
BEST3Q8N1M1 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 ECEL1P1-201ENST00000373592 1742 ntBASIC19.27■□□□□ 0.68
BEST3Q8N1M1 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
BEST3Q8N1M1 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
BEST3Q8N1M1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 CD99P1-205ENST00000527459 561 ntBASIC19.26■□□□□ 0.67
BEST3Q8N1M1 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 AC133041.1-202ENST00000642053 222 ntBASIC19.26■□□□□ 0.67
BEST3Q8N1M1 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BEST3Q8N1M1 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 MIPEPP3-201ENST00000412105 444 ntBASIC19.25■□□□□ 0.67
BEST3Q8N1M1 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BEST3Q8N1M1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 AL512625.2-201ENST00000417533 625 ntBASIC19.24■□□□□ 0.67
BEST3Q8N1M1 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms