Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC25.47■■□□□ 1.67
USP48Q86UV5 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC25.47■■□□□ 1.67
USP48Q86UV5 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USP48Q86UV5 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC25.47■■□□□ 1.67
USP48Q86UV5 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
USP48Q86UV5 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC25.47■■□□□ 1.67
USP48Q86UV5 AC079089.2-201ENST00000531211 1277 ntBASIC25.47■■□□□ 1.67
USP48Q86UV5 EEF1DP3-203ENST00000566025 782 ntBASIC25.47■■□□□ 1.67
USP48Q86UV5 INO80E-214ENST00000620599 515 ntTSL 2 BASIC25.47■■□□□ 1.67
USP48Q86UV5 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
USP48Q86UV5 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC25.47■■□□□ 1.67
USP48Q86UV5 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USP48Q86UV5 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USP48Q86UV5 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USP48Q86UV5 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP48Q86UV5 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP48Q86UV5 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC25.46■■□□□ 1.67
USP48Q86UV5 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP48Q86UV5 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
USP48Q86UV5 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC25.46■■□□□ 1.67
USP48Q86UV5 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC25.46■■□□□ 1.67
USP48Q86UV5 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC25.46■■□□□ 1.67
USP48Q86UV5 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP48Q86UV5 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP48Q86UV5 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP48Q86UV5 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC25.45■■□□□ 1.67
USP48Q86UV5 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
USP48Q86UV5 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.67
USP48Q86UV5 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
USP48Q86UV5 PEX7-202ENST00000367756 680 ntTSL 3 BASIC25.45■■□□□ 1.66
USP48Q86UV5 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC25.45■■□□□ 1.66
USP48Q86UV5 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC25.45■■□□□ 1.66
USP48Q86UV5 USP36-216ENST00000589424 970 ntTSL 5 BASIC25.45■■□□□ 1.66
USP48Q86UV5 AC073648.6-201ENST00000641589 218 ntBASIC25.45■■□□□ 1.66
USP48Q86UV5 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
USP48Q86UV5 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC25.45■■□□□ 1.66
USP48Q86UV5 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
USP48Q86UV5 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP48Q86UV5 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC25.44■■□□□ 1.66
USP48Q86UV5 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP48Q86UV5 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC25.44■■□□□ 1.66
USP48Q86UV5 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC25.44■■□□□ 1.66
USP48Q86UV5 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
USP48Q86UV5 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC25.44■■□□□ 1.66
USP48Q86UV5 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP48Q86UV5 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC25.44■■□□□ 1.66
USP48Q86UV5 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC25.43■■□□□ 1.66
USP48Q86UV5 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
USP48Q86UV5 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
USP48Q86UV5 AC026366.1-201ENST00000488803 879 ntBASIC25.43■■□□□ 1.66
USP48Q86UV5 AC008550.1-201ENST00000511500 884 ntBASIC25.43■■□□□ 1.66
USP48Q86UV5 ISCU-212ENST00000547005 795 ntTSL 3 BASIC25.43■■□□□ 1.66
USP48Q86UV5 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC25.43■■□□□ 1.66
USP48Q86UV5 AC053503.5-201ENST00000601508 636 ntBASIC25.43■■□□□ 1.66
USP48Q86UV5 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC25.43■■□□□ 1.66
USP48Q86UV5 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC25.43■■□□□ 1.66
USP48Q86UV5 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
USP48Q86UV5 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP48Q86UV5 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP48Q86UV5 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP48Q86UV5 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP48Q86UV5 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC25.43■■□□□ 1.66
USP48Q86UV5 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP48Q86UV5 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC25.42■■□□□ 1.66
USP48Q86UV5 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP48Q86UV5 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC25.42■■□□□ 1.66
USP48Q86UV5 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP48Q86UV5 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC25.42■■□□□ 1.66
USP48Q86UV5 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC25.42■■□□□ 1.66
USP48Q86UV5 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
USP48Q86UV5 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC25.42■■□□□ 1.66
USP48Q86UV5 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
USP48Q86UV5 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP48Q86UV5 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
USP48Q86UV5 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
USP48Q86UV5 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP48Q86UV5 AC026310.3-201ENST00000625186 2373 ntBASIC25.41■■□□□ 1.66
USP48Q86UV5 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP48Q86UV5 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC25.41■■□□□ 1.66
USP48Q86UV5 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
USP48Q86UV5 OR2A1-AS1-201ENST00000462305 773 ntBASIC25.41■■□□□ 1.66
USP48Q86UV5 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC25.41■■□□□ 1.66
USP48Q86UV5 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
USP48Q86UV5 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP48Q86UV5 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP48Q86UV5 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC25.4■■□□□ 1.66
USP48Q86UV5 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC25.4■■□□□ 1.66
USP48Q86UV5 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USP48Q86UV5 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP48Q86UV5 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC25.4■■□□□ 1.66
USP48Q86UV5 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USP48Q86UV5 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USP48Q86UV5 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USP48Q86UV5 AC010980.2-201ENST00000587099 1412 ntBASIC25.4■■□□□ 1.66
USP48Q86UV5 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP48Q86UV5 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USP48Q86UV5 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP48Q86UV5 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC25.4■■□□□ 1.66
USP48Q86UV5 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC25.4■■□□□ 1.66
USP48Q86UV5 UNC93B5-201ENST00000530315 699 ntBASIC25.4■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms