Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 CYP2T3P-201ENST00000601990 817 ntBASIC19.96■□□□□ 0.79
COL28A1Q2UY09 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
COL28A1Q2UY09 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.79
COL28A1Q2UY09 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.95■□□□□ 0.78
COL28A1Q2UY09 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.95■□□□□ 0.78
COL28A1Q2UY09 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 AC133561.5-201ENST00000635547 218 ntBASIC19.94■□□□□ 0.78
COL28A1Q2UY09 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL28A1Q2UY09 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 AC008403.3-201ENST00000598924 454 ntBASIC19.93■□□□□ 0.78
COL28A1Q2UY09 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL28A1Q2UY09 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL28A1Q2UY09 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 AC233723.2-201ENST00000623798 2106 ntBASIC19.91■□□□□ 0.78
COL28A1Q2UY09 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms