Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSX2P35548 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.81■□□□□ 0.76
MSX2P35548 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.81■□□□□ 0.76
MSX2P35548 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSX2P35548 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.8■□□□□ 0.76
MSX2P35548 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
MSX2P35548 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
MSX2P35548 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.8■□□□□ 0.76
MSX2P35548 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.8■□□□□ 0.76
MSX2P35548 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.8■□□□□ 0.76
MSX2P35548 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
MSX2P35548 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.8■□□□□ 0.76
MSX2P35548 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.8■□□□□ 0.76
MSX2P35548 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.8■□□□□ 0.76
MSX2P35548 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.8■□□□□ 0.76
MSX2P35548 AC099778.1-201ENST00000568593 1911 ntBASIC19.8■□□□□ 0.76
MSX2P35548 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX2P35548 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.79■□□□□ 0.76
MSX2P35548 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.79■□□□□ 0.76
MSX2P35548 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 AL162377.1-201ENST00000618844 1793 ntBASIC19.79■□□□□ 0.76
MSX2P35548 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
MSX2P35548 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
MSX2P35548 FP700111.2-201ENST00000619190 1892 ntBASIC19.79■□□□□ 0.76
MSX2P35548 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
MSX2P35548 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSX2P35548 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.78■□□□□ 0.76
MSX2P35548 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.78■□□□□ 0.76
MSX2P35548 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
MSX2P35548 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
MSX2P35548 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.78■□□□□ 0.76
MSX2P35548 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.78■□□□□ 0.76
MSX2P35548 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
MSX2P35548 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSX2P35548 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSX2P35548 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.78■□□□□ 0.76
MSX2P35548 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSX2P35548 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSX2P35548 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
MSX2P35548 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
MSX2P35548 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.78■□□□□ 0.76
MSX2P35548 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
MSX2P35548 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.77■□□□□ 0.76
MSX2P35548 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
MSX2P35548 AP006587.3-201ENST00000525742 1516 ntBASIC19.77■□□□□ 0.76
MSX2P35548 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX2P35548 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.77■□□□□ 0.76
MSX2P35548 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX2P35548 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSX2P35548 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX2P35548 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.77■□□□□ 0.76
MSX2P35548 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
MSX2P35548 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.77■□□□□ 0.76
MSX2P35548 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.77■□□□□ 0.76
MSX2P35548 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX2P35548 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX2P35548 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX2P35548 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.77■□□□□ 0.76
MSX2P35548 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.77■□□□□ 0.76
MSX2P35548 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX2P35548 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
MSX2P35548 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
MSX2P35548 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.76■□□□□ 0.75
MSX2P35548 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
MSX2P35548 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
MSX2P35548 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.76■□□□□ 0.75
MSX2P35548 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC19.76■□□□□ 0.75
MSX2P35548 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms