Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
LDLRP01130 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.98■□□□□ 0.79
LDLRP01130 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.98■□□□□ 0.79
LDLRP01130 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LDLRP01130 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
LDLRP01130 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDLRP01130 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDLRP01130 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDLRP01130 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
LDLRP01130 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.97■□□□□ 0.79
LDLRP01130 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LDLRP01130 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.97■□□□□ 0.79
LDLRP01130 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
LDLRP01130 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
LDLRP01130 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDLRP01130 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
LDLRP01130 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.97■□□□□ 0.79
LDLRP01130 CDCA4P2-201ENST00000441182 718 ntBASIC19.97■□□□□ 0.79
LDLRP01130 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDLRP01130 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.97■□□□□ 0.79
LDLRP01130 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.97■□□□□ 0.79
LDLRP01130 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.97■□□□□ 0.79
LDLRP01130 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.97■□□□□ 0.79
LDLRP01130 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
LDLRP01130 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.97■□□□□ 0.79
LDLRP01130 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LDLRP01130 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
LDLRP01130 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDLRP01130 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDLRP01130 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDLRP01130 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
LDLRP01130 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
LDLRP01130 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LDLRP01130 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.96■□□□□ 0.79
LDLRP01130 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.96■□□□□ 0.79
LDLRP01130 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LDLRP01130 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LDLRP01130 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.96■□□□□ 0.79
LDLRP01130 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.96■□□□□ 0.79
LDLRP01130 AC104771.1-201ENST00000603335 964 ntBASIC19.96■□□□□ 0.79
LDLRP01130 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LDLRP01130 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.96■□□□□ 0.79
LDLRP01130 AC073111.5-205ENST00000641717 521 ntBASIC19.96■□□□□ 0.79
LDLRP01130 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.96■□□□□ 0.79
LDLRP01130 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
LDLRP01130 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.96■□□□□ 0.79
LDLRP01130 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LDLRP01130 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.95■□□□□ 0.78
LDLRP01130 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.95■□□□□ 0.78
LDLRP01130 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.95■□□□□ 0.78
LDLRP01130 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
LDLRP01130 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.95■□□□□ 0.78
LDLRP01130 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.95■□□□□ 0.78
LDLRP01130 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.95■□□□□ 0.78
LDLRP01130 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.95■□□□□ 0.78
LDLRP01130 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LDLRP01130 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.94■□□□□ 0.78
LDLRP01130 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.94■□□□□ 0.78
LDLRP01130 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.94■□□□□ 0.78
LDLRP01130 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LDLRP01130 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
LDLRP01130 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
LDLRP01130 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LDLRP01130 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 TMEM191A-211ENST00000637163 1067 ntBASIC19.94■□□□□ 0.78
LDLRP01130 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.94■□□□□ 0.78
LDLRP01130 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.94■□□□□ 0.78
LDLRP01130 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.94■□□□□ 0.78
LDLRP01130 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LDLRP01130 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDLRP01130 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.94■□□□□ 0.78
LDLRP01130 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDLRP01130 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.93■□□□□ 0.78
LDLRP01130 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
LDLRP01130 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDLRP01130 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.93■□□□□ 0.78
LDLRP01130 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDLRP01130 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.93■□□□□ 0.78
LDLRP01130 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms