Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.57■□□□□ 0.72
LDB3O75112 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.57■□□□□ 0.72
LDB3O75112 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.57■□□□□ 0.72
LDB3O75112 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.57■□□□□ 0.72
LDB3O75112 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDB3O75112 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDB3O75112 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDB3O75112 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
LDB3O75112 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LDB3O75112 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.57■□□□□ 0.72
LDB3O75112 RARRES2P11-201ENST00000635158 484 ntBASIC19.57■□□□□ 0.72
LDB3O75112 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDB3O75112 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LDB3O75112 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.57■□□□□ 0.72
LDB3O75112 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDB3O75112 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDB3O75112 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LDB3O75112 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
LDB3O75112 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDB3O75112 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDB3O75112 AC245052.3-201ENST00000450182 901 ntBASIC19.56■□□□□ 0.72
LDB3O75112 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.56■□□□□ 0.72
LDB3O75112 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.56■□□□□ 0.72
LDB3O75112 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.56■□□□□ 0.72
LDB3O75112 AC010536.3-201ENST00000620306 533 ntBASIC19.56■□□□□ 0.72
LDB3O75112 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.56■□□□□ 0.72
LDB3O75112 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LDB3O75112 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDB3O75112 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
LDB3O75112 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDB3O75112 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDB3O75112 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.56■□□□□ 0.72
LDB3O75112 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.55■□□□□ 0.72
LDB3O75112 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.55■□□□□ 0.72
LDB3O75112 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.55■□□□□ 0.72
LDB3O75112 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.55■□□□□ 0.72
LDB3O75112 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.55■□□□□ 0.72
LDB3O75112 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.55■□□□□ 0.72
LDB3O75112 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
LDB3O75112 RBM17P2-201ENST00000616397 1405 ntBASIC19.55■□□□□ 0.72
LDB3O75112 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.55■□□□□ 0.72
LDB3O75112 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.55■□□□□ 0.72
LDB3O75112 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LDB3O75112 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.54■□□□□ 0.72
LDB3O75112 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.54■□□□□ 0.72
LDB3O75112 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.54■□□□□ 0.72
LDB3O75112 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.54■□□□□ 0.72
LDB3O75112 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.54■□□□□ 0.72
LDB3O75112 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.54■□□□□ 0.72
LDB3O75112 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.54■□□□□ 0.72
LDB3O75112 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.54■□□□□ 0.72
LDB3O75112 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.54■□□□□ 0.72
LDB3O75112 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDB3O75112 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
LDB3O75112 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
LDB3O75112 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LDB3O75112 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.53■□□□□ 0.72
LDB3O75112 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.53■□□□□ 0.72
LDB3O75112 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
LDB3O75112 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.53■□□□□ 0.72
LDB3O75112 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.53■□□□□ 0.72
LDB3O75112 TERF1P5-201ENST00000477545 1207 ntBASIC19.53■□□□□ 0.72
LDB3O75112 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.53■□□□□ 0.72
LDB3O75112 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LDB3O75112 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LDB3O75112 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.53■□□□□ 0.72
LDB3O75112 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LDB3O75112 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LDB3O75112 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LDB3O75112 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.53■□□□□ 0.72
LDB3O75112 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.52■□□□□ 0.72
LDB3O75112 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
LDB3O75112 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
LDB3O75112 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.52■□□□□ 0.72
LDB3O75112 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.52■□□□□ 0.72
LDB3O75112 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.52■□□□□ 0.72
LDB3O75112 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.52■□□□□ 0.72
LDB3O75112 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.52■□□□□ 0.72
LDB3O75112 DUX4L16-201ENST00000555130 1264 ntBASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms