Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 AC008175.2-201ENST00000612840 297 ntBASIC23.34■■□□□ 1.33
COL4A3BPQ9Y5P4 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.34■■□□□ 1.33
COL4A3BPQ9Y5P4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A3BPQ9Y5P4 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
COL4A3BPQ9Y5P4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 ID1-201ENST00000376105 1233 ntBASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 SLC7A5P1-201ENST00000568957 537 ntBASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A3BPQ9Y5P4 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
COL4A3BPQ9Y5P4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.33■■□□□ 1.32
COL4A3BPQ9Y5P4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL4A3BPQ9Y5P4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
COL4A3BPQ9Y5P4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A3BPQ9Y5P4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 MIR663A-201ENST00000385250 93 ntBASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 AC006970.2-201ENST00000450065 779 ntBASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 PPP1R14BP3-201ENST00000509033 445 ntBASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 AC010536.3-201ENST00000620306 533 ntBASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 AC231657.2-201ENST00000624556 255 ntBASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 AC005229.4-201ENST00000610085 2198 ntBASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A3BPQ9Y5P4 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 POU5F1P4-201ENST00000413175 1085 ntBASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 MAZ-216ENST00000616501 991 ntTSL 5 BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A3BPQ9Y5P4 FEM1AP4-201ENST00000443167 1987 ntBASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 AC120498.10-201ENST00000621827 505 ntBASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A3BPQ9Y5P4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
COL4A3BPQ9Y5P4 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A3BPQ9Y5P4 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A3BPQ9Y5P4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A3BPQ9Y5P4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A3BPQ9Y5P4 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.28■■□□□ 1.32
COL4A3BPQ9Y5P4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A3BPQ9Y5P4 HLA-L-209ENST00000420110 1011 ntBASIC23.28■■□□□ 1.32
COL4A3BPQ9Y5P4 AC007322.1-201ENST00000426983 750 ntBASIC23.28■■□□□ 1.32
COL4A3BPQ9Y5P4 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.28■■□□□ 1.32
COL4A3BPQ9Y5P4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms