Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.79■□□□□ 0.76
SCN3AQ9NY46 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN3AQ9NY46 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN3AQ9NY46 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.78■□□□□ 0.76
SCN3AQ9NY46 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.78■□□□□ 0.76
SCN3AQ9NY46 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN3AQ9NY46 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SCN3AQ9NY46 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.78■□□□□ 0.76
SCN3AQ9NY46 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.78■□□□□ 0.76
SCN3AQ9NY46 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SCN3AQ9NY46 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.77■□□□□ 0.76
SCN3AQ9NY46 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.77■□□□□ 0.76
SCN3AQ9NY46 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SCN3AQ9NY46 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.77■□□□□ 0.76
SCN3AQ9NY46 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.77■□□□□ 0.76
SCN3AQ9NY46 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SCN3AQ9NY46 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.77■□□□□ 0.76
SCN3AQ9NY46 AC068338.2-201ENST00000563278 1430 ntBASIC19.77■□□□□ 0.76
SCN3AQ9NY46 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SCN3AQ9NY46 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SCN3AQ9NY46 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.75
SCN3AQ9NY46 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SCN3AQ9NY46 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
SCN3AQ9NY46 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SCN3AQ9NY46 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 CLDN5-201ENST00000403084 2357 ntBASIC19.76■□□□□ 0.75
SCN3AQ9NY46 AC005229.4-201ENST00000610085 2198 ntBASIC19.76■□□□□ 0.75
SCN3AQ9NY46 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 AC007322.3-201ENST00000426526 701 ntBASIC19.76■□□□□ 0.75
SCN3AQ9NY46 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SCN3AQ9NY46 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 AC231657.2-201ENST00000624556 255 ntBASIC19.75■□□□□ 0.75
SCN3AQ9NY46 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.75■□□□□ 0.75
SCN3AQ9NY46 AL050303.2-201ENST00000619798 666 ntBASIC19.75■□□□□ 0.75
SCN3AQ9NY46 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN3AQ9NY46 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SCN3AQ9NY46 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SCN3AQ9NY46 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.74■□□□□ 0.75
SCN3AQ9NY46 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.74■□□□□ 0.75
SCN3AQ9NY46 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
SCN3AQ9NY46 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.74■□□□□ 0.75
SCN3AQ9NY46 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.74■□□□□ 0.75
SCN3AQ9NY46 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN3AQ9NY46 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 AF201337.1-201ENST00000520239 748 ntBASIC19.73■□□□□ 0.75
SCN3AQ9NY46 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 AC080038.1-201ENST00000611274 1154 ntBASIC19.73■□□□□ 0.75
SCN3AQ9NY46 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SCN3AQ9NY46 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms