Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC22.27■■□□□ 1.16
CISHQ9NSE2 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CISHQ9NSE2 AC092437.1-201ENST00000624794 1048 ntBASIC22.27■■□□□ 1.16
CISHQ9NSE2 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC22.27■■□□□ 1.16
CISHQ9NSE2 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CISHQ9NSE2 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.27■■□□□ 1.15
CISHQ9NSE2 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.26■■□□□ 1.15
CISHQ9NSE2 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
CISHQ9NSE2 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC22.26■■□□□ 1.15
CISHQ9NSE2 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CISHQ9NSE2 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.26■■□□□ 1.15
CISHQ9NSE2 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CISHQ9NSE2 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CISHQ9NSE2 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CISHQ9NSE2 BRI3-207ENST00000539286 699 ntTSL 2 BASIC22.26■■□□□ 1.15
CISHQ9NSE2 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.26■■□□□ 1.15
CISHQ9NSE2 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CISHQ9NSE2 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CISHQ9NSE2 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CISHQ9NSE2 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC22.26■■□□□ 1.15
CISHQ9NSE2 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CISHQ9NSE2 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CISHQ9NSE2 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CISHQ9NSE2 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CISHQ9NSE2 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CISHQ9NSE2 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
CISHQ9NSE2 RBM17P2-201ENST00000616397 1405 ntBASIC22.25■■□□□ 1.15
CISHQ9NSE2 AC245052.3-201ENST00000450182 901 ntBASIC22.25■■□□□ 1.15
CISHQ9NSE2 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC22.25■■□□□ 1.15
CISHQ9NSE2 MFSD11-216ENST00000590393 1141 ntBASIC22.25■■□□□ 1.15
CISHQ9NSE2 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CISHQ9NSE2 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC22.25■■□□□ 1.15
CISHQ9NSE2 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC22.25■■□□□ 1.15
CISHQ9NSE2 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CISHQ9NSE2 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC22.25■■□□□ 1.15
CISHQ9NSE2 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC22.24■■□□□ 1.15
CISHQ9NSE2 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CISHQ9NSE2 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC22.24■■□□□ 1.15
CISHQ9NSE2 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CISHQ9NSE2 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC22.24■■□□□ 1.15
CISHQ9NSE2 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CISHQ9NSE2 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CISHQ9NSE2 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC22.24■■□□□ 1.15
CISHQ9NSE2 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.24■■□□□ 1.15
CISHQ9NSE2 PALM-208ENST00000592155 2272 ntTSL 4 BASIC22.24■■□□□ 1.15
CISHQ9NSE2 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CISHQ9NSE2 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CISHQ9NSE2 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CISHQ9NSE2 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CISHQ9NSE2 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC22.23■■□□□ 1.15
CISHQ9NSE2 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC22.23■■□□□ 1.15
CISHQ9NSE2 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CISHQ9NSE2 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.23■■□□□ 1.15
CISHQ9NSE2 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC22.23■■□□□ 1.15
CISHQ9NSE2 AC010536.3-201ENST00000620306 533 ntBASIC22.23■■□□□ 1.15
CISHQ9NSE2 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CISHQ9NSE2 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
CISHQ9NSE2 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
CISHQ9NSE2 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
CISHQ9NSE2 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
CISHQ9NSE2 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
CISHQ9NSE2 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CISHQ9NSE2 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CISHQ9NSE2 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC22.22■■□□□ 1.15
CISHQ9NSE2 AC243732.1-201ENST00000612648 864 ntBASIC22.22■■□□□ 1.15
CISHQ9NSE2 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.22■■□□□ 1.15
CISHQ9NSE2 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
CISHQ9NSE2 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CISHQ9NSE2 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CISHQ9NSE2 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CISHQ9NSE2 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CISHQ9NSE2 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
CISHQ9NSE2 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC22.21■■□□□ 1.15
CISHQ9NSE2 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CISHQ9NSE2 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.21■■□□□ 1.15
CISHQ9NSE2 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CISHQ9NSE2 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC22.21■■□□□ 1.15
CISHQ9NSE2 AC011767.1-201ENST00000617410 1153 ntBASIC22.21■■□□□ 1.15
CISHQ9NSE2 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.21■■□□□ 1.15
CISHQ9NSE2 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CISHQ9NSE2 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CISHQ9NSE2 EXOC3-AS1-202ENST00000623673 1663 ntBASIC22.2■■□□□ 1.15
CISHQ9NSE2 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CISHQ9NSE2 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CISHQ9NSE2 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CISHQ9NSE2 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CISHQ9NSE2 UQCRFS1P1-201ENST00000435169 820 ntBASIC22.2■■□□□ 1.14
CISHQ9NSE2 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC22.2■■□□□ 1.14
CISHQ9NSE2 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC22.2■■□□□ 1.14
CISHQ9NSE2 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC22.2■■□□□ 1.14
CISHQ9NSE2 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CISHQ9NSE2 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
CISHQ9NSE2 BID-214ENST00000617586 542 ntTSL 5 BASIC22.2■■□□□ 1.14
CISHQ9NSE2 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.2■■□□□ 1.14
CISHQ9NSE2 GAS2L1P2-201ENST00000436355 1356 ntBASIC22.2■■□□□ 1.14
CISHQ9NSE2 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CISHQ9NSE2 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
CISHQ9NSE2 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CISHQ9NSE2 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC22.2■■□□□ 1.14
CISHQ9NSE2 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms