Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
MMP28Q9H239 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
MMP28Q9H239 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MMP28Q9H239 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MMP28Q9H239 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
MMP28Q9H239 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
MMP28Q9H239 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
MMP28Q9H239 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
MMP28Q9H239 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MMP28Q9H239 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.3■□□□□ 0.52
MMP28Q9H239 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MMP28Q9H239 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MMP28Q9H239 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.3■□□□□ 0.52
MMP28Q9H239 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
MMP28Q9H239 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
MMP28Q9H239 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MMP28Q9H239 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MMP28Q9H239 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.3■□□□□ 0.52
MMP28Q9H239 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.3■□□□□ 0.52
MMP28Q9H239 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MMP28Q9H239 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.3■□□□□ 0.52
MMP28Q9H239 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MMP28Q9H239 AC009102.2-201ENST00000606772 1639 ntBASIC18.3■□□□□ 0.52
MMP28Q9H239 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MMP28Q9H239 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.3■□□□□ 0.52
MMP28Q9H239 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MMP28Q9H239 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.29■□□□□ 0.52
MMP28Q9H239 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.29■□□□□ 0.52
MMP28Q9H239 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.29■□□□□ 0.52
MMP28Q9H239 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.29■□□□□ 0.52
MMP28Q9H239 MIR3621-201ENST00000580529 85 ntBASIC18.29■□□□□ 0.52
MMP28Q9H239 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.29■□□□□ 0.52
MMP28Q9H239 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.29■□□□□ 0.52
MMP28Q9H239 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.29■□□□□ 0.52
MMP28Q9H239 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
MMP28Q9H239 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.29■□□□□ 0.52
MMP28Q9H239 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MMP28Q9H239 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
MMP28Q9H239 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
MMP28Q9H239 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.28■□□□□ 0.52
MMP28Q9H239 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
MMP28Q9H239 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MMP28Q9H239 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
MMP28Q9H239 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.28■□□□□ 0.52
MMP28Q9H239 AC112907.3-201ENST00000577781 2400 ntBASIC18.28■□□□□ 0.52
MMP28Q9H239 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MMP28Q9H239 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.27■□□□□ 0.52
MMP28Q9H239 AC026471.6-201ENST00000622954 1905 ntBASIC18.27■□□□□ 0.52
MMP28Q9H239 AL049796.1-201ENST00000565336 1766 ntBASIC18.27■□□□□ 0.52
MMP28Q9H239 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
MMP28Q9H239 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
MMP28Q9H239 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
MMP28Q9H239 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.27■□□□□ 0.52
MMP28Q9H239 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.27■□□□□ 0.52
MMP28Q9H239 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MMP28Q9H239 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.27■□□□□ 0.52
MMP28Q9H239 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
MMP28Q9H239 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
MMP28Q9H239 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
MMP28Q9H239 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
MMP28Q9H239 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MMP28Q9H239 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
MMP28Q9H239 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
MMP28Q9H239 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
MMP28Q9H239 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MMP28Q9H239 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
MMP28Q9H239 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
MMP28Q9H239 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
MMP28Q9H239 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.26■□□□□ 0.51
MMP28Q9H239 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MMP28Q9H239 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MMP28Q9H239 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MMP28Q9H239 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.26■□□□□ 0.51
MMP28Q9H239 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MMP28Q9H239 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MMP28Q9H239 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.26■□□□□ 0.51
MMP28Q9H239 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms