Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 KRT17P1-201ENST00000399211 1546 ntBASIC20.36■□□□□ 0.85
LMX1AQ8TE12 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1AQ8TE12 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 ESRRAP1-201ENST00000400596 1257 ntBASIC20.35■□□□□ 0.85
LMX1AQ8TE12 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1AQ8TE12 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 CYP2T3P-201ENST00000601990 817 ntBASIC20.34■□□□□ 0.85
LMX1AQ8TE12 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1AQ8TE12 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 AC100791.3-201ENST00000617619 330 ntBASIC20.33■□□□□ 0.85
LMX1AQ8TE12 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.33■□□□□ 0.85
LMX1AQ8TE12 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.33■□□□□ 0.84
LMX1AQ8TE12 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LMX1AQ8TE12 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LMX1AQ8TE12 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LMX1AQ8TE12 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 AC242852.2-201ENST00000615738 1807 ntBASIC20.32■□□□□ 0.84
LMX1AQ8TE12 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 PRORSD1P-201ENST00000295112 541 ntBASIC20.32■□□□□ 0.84
LMX1AQ8TE12 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.32■□□□□ 0.84
LMX1AQ8TE12 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1AQ8TE12 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms