Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
DEPDC4Q8N2C3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
DEPDC4Q8N2C3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
DEPDC4Q8N2C3 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
DEPDC4Q8N2C3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
DEPDC4Q8N2C3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.31■□□□□ 0.68
DEPDC4Q8N2C3 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 AC099791.1-201ENST00000416440 715 ntBASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
DEPDC4Q8N2C3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 ZNRF2P3-201ENST00000424200 374 ntBASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 AC068587.7-201ENST00000641602 218 ntBASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
DEPDC4Q8N2C3 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 AC126544.1-201ENST00000580842 1059 ntBASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.28■□□□□ 0.68
DEPDC4Q8N2C3 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
DEPDC4Q8N2C3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
DEPDC4Q8N2C3 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
DEPDC4Q8N2C3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
DEPDC4Q8N2C3 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
DEPDC4Q8N2C3 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.27■□□□□ 0.67
DEPDC4Q8N2C3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 AC133637.1-201ENST00000624115 1537 ntBASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.26■□□□□ 0.67
DEPDC4Q8N2C3 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms