Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC22.53■■□□□ 1.2
KRT39Q6A163 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KRT39Q6A163 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
KRT39Q6A163 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
KRT39Q6A163 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC22.52■■□□□ 1.2
KRT39Q6A163 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
KRT39Q6A163 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
KRT39Q6A163 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22.52■■□□□ 1.2
KRT39Q6A163 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
KRT39Q6A163 SLC7A5P1-201ENST00000568957 537 ntBASIC22.52■■□□□ 1.2
KRT39Q6A163 ANKRD20A6P-201ENST00000618763 204 ntBASIC22.52■■□□□ 1.2
KRT39Q6A163 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
KRT39Q6A163 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
KRT39Q6A163 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
KRT39Q6A163 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT39Q6A163 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
KRT39Q6A163 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC22.51■■□□□ 1.19
KRT39Q6A163 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT39Q6A163 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
KRT39Q6A163 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
KRT39Q6A163 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
KRT39Q6A163 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
KRT39Q6A163 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC22.5■■□□□ 1.19
KRT39Q6A163 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC22.5■■□□□ 1.19
KRT39Q6A163 AL162430.1-201ENST00000480705 870 ntBASIC22.5■■□□□ 1.19
KRT39Q6A163 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC22.5■■□□□ 1.19
KRT39Q6A163 TFG-210ENST00000620299 1289 ntTSL 5 BASIC22.5■■□□□ 1.19
KRT39Q6A163 RARRES2P11-201ENST00000635158 484 ntBASIC22.5■■□□□ 1.19
KRT39Q6A163 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
KRT39Q6A163 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.5■■□□□ 1.19
KRT39Q6A163 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
KRT39Q6A163 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
KRT39Q6A163 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.5■■□□□ 1.19
KRT39Q6A163 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
KRT39Q6A163 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
KRT39Q6A163 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
KRT39Q6A163 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
KRT39Q6A163 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC22.49■■□□□ 1.19
KRT39Q6A163 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC22.49■■□□□ 1.19
KRT39Q6A163 MIR935-201ENST00000401179 91 ntBASIC22.49■■□□□ 1.19
KRT39Q6A163 GXYLT1P2-201ENST00000433312 1230 ntBASIC22.49■■□□□ 1.19
KRT39Q6A163 AC245052.3-201ENST00000450182 901 ntBASIC22.49■■□□□ 1.19
KRT39Q6A163 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC22.49■■□□□ 1.19
KRT39Q6A163 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
KRT39Q6A163 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
KRT39Q6A163 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
KRT39Q6A163 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC22.49■■□□□ 1.19
KRT39Q6A163 UBE2DNL-204ENST00000602536 740 ntBASIC22.49■■□□□ 1.19
KRT39Q6A163 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
KRT39Q6A163 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC22.49■■□□□ 1.19
KRT39Q6A163 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
KRT39Q6A163 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
KRT39Q6A163 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.48■■□□□ 1.19
KRT39Q6A163 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC22.48■■□□□ 1.19
KRT39Q6A163 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
KRT39Q6A163 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
KRT39Q6A163 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC22.48■■□□□ 1.19
KRT39Q6A163 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.48■■□□□ 1.19
KRT39Q6A163 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
KRT39Q6A163 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.48■■□□□ 1.19
KRT39Q6A163 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
KRT39Q6A163 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.48■■□□□ 1.19
KRT39Q6A163 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC22.48■■□□□ 1.19
KRT39Q6A163 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC22.48■■□□□ 1.19
KRT39Q6A163 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC22.48■■□□□ 1.19
KRT39Q6A163 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
KRT39Q6A163 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
KRT39Q6A163 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
KRT39Q6A163 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
KRT39Q6A163 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
KRT39Q6A163 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
KRT39Q6A163 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
KRT39Q6A163 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
KRT39Q6A163 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
KRT39Q6A163 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
KRT39Q6A163 EXOC3-AS1-202ENST00000623673 1663 ntBASIC22.47■■□□□ 1.19
KRT39Q6A163 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
KRT39Q6A163 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
KRT39Q6A163 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
KRT39Q6A163 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC22.47■■□□□ 1.19
KRT39Q6A163 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC22.47■■□□□ 1.19
KRT39Q6A163 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.47■■□□□ 1.19
KRT39Q6A163 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC22.47■■□□□ 1.19
KRT39Q6A163 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
KRT39Q6A163 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.47■■□□□ 1.19
KRT39Q6A163 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
KRT39Q6A163 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
KRT39Q6A163 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC22.47■■□□□ 1.19
KRT39Q6A163 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC22.47■■□□□ 1.19
KRT39Q6A163 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
KRT39Q6A163 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC22.47■■□□□ 1.19
KRT39Q6A163 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
KRT39Q6A163 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
KRT39Q6A163 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC22.46■■□□□ 1.19
KRT39Q6A163 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC22.46■■□□□ 1.19
KRT39Q6A163 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
KRT39Q6A163 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
KRT39Q6A163 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC22.46■■□□□ 1.19
KRT39Q6A163 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC22.46■■□□□ 1.19
KRT39Q6A163 MYCNOS-205ENST00000641950 531 ntBASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms