Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC58Q4VC31 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 AL356740.2-201ENST00000601559 647 ntBASIC18.55■□□□□ 0.56
CCDC58Q4VC31 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 AP005212.1-201ENST00000581547 1997 ntBASIC18.55■□□□□ 0.56
CCDC58Q4VC31 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC58Q4VC31 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC58Q4VC31 AP006587.3-201ENST00000525742 1516 ntBASIC18.54■□□□□ 0.56
CCDC58Q4VC31 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 KRT16P3-201ENST00000439127 1283 ntBASIC18.53■□□□□ 0.56
CCDC58Q4VC31 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 AP005435.1-201ENST00000529293 1178 ntBASIC18.53■□□□□ 0.56
CCDC58Q4VC31 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 AC010525.1-201ENST00000585559 441 ntBASIC18.53■□□□□ 0.56
CCDC58Q4VC31 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CCDC58Q4VC31 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms