Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
PDLIM4P50479 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.68■□□□□ 0.42
PDLIM4P50479 AL591742.1-201ENST00000604433 565 ntBASIC17.68■□□□□ 0.42
PDLIM4P50479 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
PDLIM4P50479 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM4P50479 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PDLIM4P50479 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM4P50479 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM4P50479 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
PDLIM4P50479 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.67■□□□□ 0.42
PDLIM4P50479 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.67■□□□□ 0.42
PDLIM4P50479 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
PDLIM4P50479 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PDLIM4P50479 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.67■□□□□ 0.42
PDLIM4P50479 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.67■□□□□ 0.42
PDLIM4P50479 AC098934.4-201ENST00000564127 592 ntBASIC17.67■□□□□ 0.42
PDLIM4P50479 AL162412.1-201ENST00000567129 965 ntBASIC17.67■□□□□ 0.42
PDLIM4P50479 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
PDLIM4P50479 AC243732.1-201ENST00000612648 864 ntBASIC17.67■□□□□ 0.42
PDLIM4P50479 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.67■□□□□ 0.42
PDLIM4P50479 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.67■□□□□ 0.42
PDLIM4P50479 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PDLIM4P50479 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC17.67■□□□□ 0.42
PDLIM4P50479 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
PDLIM4P50479 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM4P50479 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 RBM17P2-201ENST00000616397 1405 ntBASIC17.66■□□□□ 0.42
PDLIM4P50479 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PDLIM4P50479 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PDLIM4P50479 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PDLIM4P50479 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PDLIM4P50479 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.66■□□□□ 0.42
PDLIM4P50479 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM4P50479 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.66■□□□□ 0.42
PDLIM4P50479 AC093787.1-201ENST00000450396 207 ntBASIC17.66■□□□□ 0.42
PDLIM4P50479 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM4P50479 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM4P50479 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.66■□□□□ 0.42
PDLIM4P50479 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.66■□□□□ 0.42
PDLIM4P50479 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM4P50479 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM4P50479 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM4P50479 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM4P50479 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PDLIM4P50479 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM4P50479 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
PDLIM4P50479 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
PDLIM4P50479 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM4P50479 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM4P50479 BX276092.2-201ENST00000417668 665 ntBASIC17.65■□□□□ 0.42
PDLIM4P50479 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM4P50479 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.65■□□□□ 0.42
PDLIM4P50479 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.65■□□□□ 0.42
PDLIM4P50479 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.65■□□□□ 0.42
PDLIM4P50479 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.65■□□□□ 0.42
PDLIM4P50479 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.65■□□□□ 0.42
PDLIM4P50479 AC092118.2-201ENST00000613495 667 ntBASIC17.65■□□□□ 0.42
PDLIM4P50479 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.65■□□□□ 0.42
PDLIM4P50479 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.65■□□□□ 0.42
PDLIM4P50479 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
PDLIM4P50479 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.65■□□□□ 0.42
PDLIM4P50479 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM4P50479 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM4P50479 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PDLIM4P50479 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.65■□□□□ 0.42
PDLIM4P50479 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM4P50479 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM4P50479 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM4P50479 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM4P50479 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
PDLIM4P50479 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM4P50479 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM4P50479 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM4P50479 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.64■□□□□ 0.41
PDLIM4P50479 RNA5SP413-201ENST00000516373 109 ntBASIC17.64■□□□□ 0.41
PDLIM4P50479 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.64■□□□□ 0.41
PDLIM4P50479 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
PDLIM4P50479 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM4P50479 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.64■□□□□ 0.41
PDLIM4P50479 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms