Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.84■□□□□ 0.93
PTPN4P29074 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PTPN4P29074 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN4P29074 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.84■□□□□ 0.93
PTPN4P29074 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN4P29074 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.84■□□□□ 0.93
PTPN4P29074 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.84■□□□□ 0.93
PTPN4P29074 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN4P29074 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN4P29074 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN4P29074 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN4P29074 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
PTPN4P29074 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
PTPN4P29074 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.93
PTPN4P29074 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN4P29074 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.83■□□□□ 0.93
PTPN4P29074 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN4P29074 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN4P29074 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN4P29074 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.83■□□□□ 0.93
PTPN4P29074 AC022517.1-201ENST00000592429 346 ntBASIC20.83■□□□□ 0.93
PTPN4P29074 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTPN4P29074 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.83■□□□□ 0.92
PTPN4P29074 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTPN4P29074 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTPN4P29074 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTPN4P29074 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.83■□□□□ 0.92
PTPN4P29074 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.83■□□□□ 0.92
PTPN4P29074 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
PTPN4P29074 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
PTPN4P29074 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN4P29074 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.82■□□□□ 0.92
PTPN4P29074 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN4P29074 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.82■□□□□ 0.92
PTPN4P29074 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN4P29074 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.82■□□□□ 0.92
PTPN4P29074 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN4P29074 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.82■□□□□ 0.92
PTPN4P29074 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.82■□□□□ 0.92
PTPN4P29074 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
PTPN4P29074 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
PTPN4P29074 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN4P29074 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.81■□□□□ 0.92
PTPN4P29074 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN4P29074 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN4P29074 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PTPN4P29074 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PTPN4P29074 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN4P29074 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.81■□□□□ 0.92
PTPN4P29074 OXCT2P1-201ENST00000447263 1535 ntBASIC20.81■□□□□ 0.92
PTPN4P29074 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
PTPN4P29074 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
PTPN4P29074 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.92
PTPN4P29074 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN4P29074 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN4P29074 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.81■□□□□ 0.92
PTPN4P29074 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN4P29074 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PTPN4P29074 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN4P29074 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.8■□□□□ 0.92
PTPN4P29074 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN4P29074 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN4P29074 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
PTPN4P29074 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN4P29074 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
PTPN4P29074 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN4P29074 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTPN4P29074 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.8■□□□□ 0.92
PTPN4P29074 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.79■□□□□ 0.92
PTPN4P29074 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN4P29074 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN4P29074 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN4P29074 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN4P29074 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN4P29074 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN4P29074 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN4P29074 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN4P29074 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN4P29074 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
PTPN4P29074 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN4P29074 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
PTPN4P29074 CCDC92B-201ENST00000575506 885 ntBASIC20.79■□□□□ 0.92
PTPN4P29074 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN4P29074 IKBKGP1-201ENST00000612193 1073 ntBASIC20.79■□□□□ 0.92
PTPN4P29074 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN4P29074 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
PTPN4P29074 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTPN4P29074 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.79■□□□□ 0.92
PTPN4P29074 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.78■□□□□ 0.92
PTPN4P29074 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
PTPN4P29074 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
PTPN4P29074 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 GABARAPL3-202ENST00000624044 1851 ntBASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms