Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
FOXN3O00409 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC22.33■■□□□ 1.17
FOXN3O00409 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.33■■□□□ 1.17
FOXN3O00409 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC22.33■■□□□ 1.17
FOXN3O00409 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
FOXN3O00409 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
FOXN3O00409 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
FOXN3O00409 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
FOXN3O00409 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
FOXN3O00409 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
FOXN3O00409 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC22.33■■□□□ 1.17
FOXN3O00409 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
FOXN3O00409 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
FOXN3O00409 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
FOXN3O00409 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
FOXN3O00409 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
FOXN3O00409 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC22.33■■□□□ 1.16
FOXN3O00409 AC006128.1-201ENST00000624704 1661 ntBASIC22.33■■□□□ 1.16
FOXN3O00409 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
FOXN3O00409 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
FOXN3O00409 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
FOXN3O00409 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
FOXN3O00409 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
FOXN3O00409 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
FOXN3O00409 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
FOXN3O00409 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
FOXN3O00409 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
FOXN3O00409 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
FOXN3O00409 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC22.32■■□□□ 1.16
FOXN3O00409 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC22.32■■□□□ 1.16
FOXN3O00409 AC010141.2-201ENST00000452426 721 ntBASIC22.32■■□□□ 1.16
FOXN3O00409 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC22.32■■□□□ 1.16
FOXN3O00409 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.32■■□□□ 1.16
FOXN3O00409 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC22.32■■□□□ 1.16
FOXN3O00409 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC22.32■■□□□ 1.16
FOXN3O00409 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC22.32■■□□□ 1.16
FOXN3O00409 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
FOXN3O00409 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
FOXN3O00409 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
FOXN3O00409 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
FOXN3O00409 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.31■■□□□ 1.16
FOXN3O00409 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
FOXN3O00409 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.31■■□□□ 1.16
FOXN3O00409 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
FOXN3O00409 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
FOXN3O00409 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
FOXN3O00409 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC22.31■■□□□ 1.16
FOXN3O00409 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC22.31■■□□□ 1.16
FOXN3O00409 COX20-201ENST00000366528 568 ntTSL 2 BASIC22.31■■□□□ 1.16
FOXN3O00409 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC22.31■■□□□ 1.16
FOXN3O00409 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
FOXN3O00409 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
FOXN3O00409 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
FOXN3O00409 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
FOXN3O00409 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
FOXN3O00409 AC004854.2-201ENST00000608450 1441 ntBASIC22.31■■□□□ 1.16
FOXN3O00409 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
FOXN3O00409 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
FOXN3O00409 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
FOXN3O00409 EXOC3-AS1-202ENST00000623673 1663 ntBASIC22.3■■□□□ 1.16
FOXN3O00409 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
FOXN3O00409 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC22.3■■□□□ 1.16
FOXN3O00409 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC22.3■■□□□ 1.16
FOXN3O00409 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
FOXN3O00409 SLC7A5P2-201ENST00000553010 536 ntBASIC22.3■■□□□ 1.16
FOXN3O00409 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC22.3■■□□□ 1.16
FOXN3O00409 AP001160.3-201ENST00000601484 763 ntBASIC22.3■■□□□ 1.16
FOXN3O00409 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC22.3■■□□□ 1.16
FOXN3O00409 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC22.3■■□□□ 1.16
FOXN3O00409 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC22.3■■□□□ 1.16
FOXN3O00409 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC22.3■■□□□ 1.16
FOXN3O00409 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
FOXN3O00409 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC22.3■■□□□ 1.16
FOXN3O00409 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
FOXN3O00409 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC22.3■■□□□ 1.16
FOXN3O00409 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
FOXN3O00409 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
FOXN3O00409 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
FOXN3O00409 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
FOXN3O00409 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
FOXN3O00409 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
FOXN3O00409 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
FOXN3O00409 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
FOXN3O00409 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
FOXN3O00409 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
FOXN3O00409 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC22.29■■□□□ 1.16
FOXN3O00409 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
FOXN3O00409 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC22.29■■□□□ 1.16
FOXN3O00409 TESC-206ENST00000541210 936 ntTSL 3 BASIC22.29■■□□□ 1.16
FOXN3O00409 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC22.29■■□□□ 1.16
FOXN3O00409 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
FOXN3O00409 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
FOXN3O00409 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC22.29■■□□□ 1.16
FOXN3O00409 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
FOXN3O00409 DUX4L2-201ENST00000561772 1275 ntBASIC22.28■■□□□ 1.16
FOXN3O00409 KRT18P61-201ENST00000585825 1298 ntBASIC22.28■■□□□ 1.16
FOXN3O00409 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.28■■□□□ 1.16
FOXN3O00409 DUX4L6-201ENST00000626483 1275 ntBASIC22.28■■□□□ 1.16
FOXN3O00409 DUX4L1-201ENST00000627662 1275 ntBASIC22.28■■□□□ 1.16
FOXN3O00409 DUX4L8-201ENST00000629013 1275 ntBASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms