Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 CASP6-205ENST00000505486 538 ntTSL 4 BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 FAM21FP-204ENST00000608637 956 ntBASIC24.85■■□□□ 1.57
DDX4Q9NQI0 ITM2C-210ENST00000620962 501 ntBASIC24.85■■□□□ 1.57
DDX4Q9NQI0 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX4Q9NQI0 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 ME2-206ENST00000638410 2289 ntTSL 5 BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 ME2-210ENST00000639255 2262 ntTSL 5 BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX4Q9NQI0 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
DDX4Q9NQI0 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
DDX4Q9NQI0 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC24.83■■□□□ 1.57
DDX4Q9NQI0 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC24.83■■□□□ 1.57
DDX4Q9NQI0 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC24.83■■□□□ 1.57
DDX4Q9NQI0 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
DDX4Q9NQI0 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC24.83■■□□□ 1.57
DDX4Q9NQI0 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC24.83■■□□□ 1.57
DDX4Q9NQI0 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.56
DDX4Q9NQI0 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
DDX4Q9NQI0 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
DDX4Q9NQI0 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
DDX4Q9NQI0 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 AC242852.2-201ENST00000615738 1807 ntBASIC24.81■■□□□ 1.56
DDX4Q9NQI0 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
DDX4Q9NQI0 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 CYP2T3P-201ENST00000601990 817 ntBASIC24.8■■□□□ 1.56
DDX4Q9NQI0 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
DDX4Q9NQI0 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 KRT18P29-201ENST00000397031 1267 ntBASIC24.79■■□□□ 1.56
DDX4Q9NQI0 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
DDX4Q9NQI0 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 GAS7-202ENST00000396115 929 ntTSL 5 BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 ESRRAP1-201ENST00000400596 1257 ntBASIC24.78■■□□□ 1.56
DDX4Q9NQI0 LSM12P1-201ENST00000411836 588 ntBASIC24.78■■□□□ 1.56
DDX4Q9NQI0 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 ADM-205ENST00000528544 586 ntTSL 2 BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 INO80E-214ENST00000620599 515 ntTSL 2 BASIC24.78■■□□□ 1.56
DDX4Q9NQI0 GUSBP5-202ENST00000510805 1989 ntBASIC24.78■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms