Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 YBX1P1-201ENST00000445822 960 ntBASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 AP004607.4-201ENST00000530158 1459 ntBASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 AC008175.2-201ENST00000612840 297 ntBASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 AC061975.6-201ENST00000579045 1553 ntBASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
LRRC40Q9H9A6 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 POU5F1P4-201ENST00000413175 1085 ntBASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.17■□□□□ 0.98
LRRC40Q9H9A6 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 AC138907.5-202ENST00000569484 235 ntBASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 TERF1P2-201ENST00000583350 1212 ntBASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC40Q9H9A6 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 ZNRF2P3-201ENST00000424200 374 ntBASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC40Q9H9A6 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRRC40Q9H9A6 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRRC40Q9H9A6 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.14■□□□□ 0.98
LRRC40Q9H9A6 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.14■□□□□ 0.98
LRRC40Q9H9A6 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC40Q9H9A6 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.14■□□□□ 0.97
LRRC40Q9H9A6 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC40Q9H9A6 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
LRRC40Q9H9A6 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
LRRC40Q9H9A6 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.14■□□□□ 0.97
LRRC40Q9H9A6 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.14■□□□□ 0.97
LRRC40Q9H9A6 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.14■□□□□ 0.97
LRRC40Q9H9A6 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms