Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LIME1Q9H400 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIME1Q9H400 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.34■□□□□ 0.53
LIME1Q9H400 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.34■□□□□ 0.53
LIME1Q9H400 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIME1Q9H400 CYP2T1P-201ENST00000432607 1285 ntBASIC18.34■□□□□ 0.53
LIME1Q9H400 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.34■□□□□ 0.53
LIME1Q9H400 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.34■□□□□ 0.53
LIME1Q9H400 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
LIME1Q9H400 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIME1Q9H400 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIME1Q9H400 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIME1Q9H400 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
LIME1Q9H400 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.33■□□□□ 0.53
LIME1Q9H400 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIME1Q9H400 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
LIME1Q9H400 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIME1Q9H400 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIME1Q9H400 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.33■□□□□ 0.52
LIME1Q9H400 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.33■□□□□ 0.52
LIME1Q9H400 AC093787.1-201ENST00000450396 207 ntBASIC18.33■□□□□ 0.52
LIME1Q9H400 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.33■□□□□ 0.52
LIME1Q9H400 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LIME1Q9H400 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.33■□□□□ 0.52
LIME1Q9H400 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.33■□□□□ 0.52
LIME1Q9H400 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIME1Q9H400 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.33■□□□□ 0.52
LIME1Q9H400 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIME1Q9H400 AC010542.4-201ENST00000563151 1910 ntBASIC18.33■□□□□ 0.52
LIME1Q9H400 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.32■□□□□ 0.52
LIME1Q9H400 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIME1Q9H400 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIME1Q9H400 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.32■□□□□ 0.52
LIME1Q9H400 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LIME1Q9H400 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.32■□□□□ 0.52
LIME1Q9H400 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIME1Q9H400 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LIME1Q9H400 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.32■□□□□ 0.52
LIME1Q9H400 TERF1P5-201ENST00000477545 1207 ntBASIC18.32■□□□□ 0.52
LIME1Q9H400 RARRES2P4-201ENST00000514074 484 ntBASIC18.32■□□□□ 0.52
LIME1Q9H400 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.32■□□□□ 0.52
LIME1Q9H400 AC138907.5-202ENST00000569484 235 ntBASIC18.32■□□□□ 0.52
LIME1Q9H400 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIME1Q9H400 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.32■□□□□ 0.52
LIME1Q9H400 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIME1Q9H400 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIME1Q9H400 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIME1Q9H400 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LIME1Q9H400 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIME1Q9H400 FAM99A-202ENST00000538190 1989 ntBASIC18.31■□□□□ 0.52
LIME1Q9H400 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
LIME1Q9H400 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIME1Q9H400 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIME1Q9H400 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIME1Q9H400 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.31■□□□□ 0.52
LIME1Q9H400 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIME1Q9H400 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.31■□□□□ 0.52
LIME1Q9H400 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIME1Q9H400 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.31■□□□□ 0.52
LIME1Q9H400 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIME1Q9H400 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.31■□□□□ 0.52
LIME1Q9H400 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.31■□□□□ 0.52
LIME1Q9H400 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIME1Q9H400 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.31■□□□□ 0.52
LIME1Q9H400 KRT18P20-201ENST00000548986 1279 ntBASIC18.31■□□□□ 0.52
LIME1Q9H400 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.31■□□□□ 0.52
LIME1Q9H400 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LIME1Q9H400 AC013268.1-206ENST00000638368 961 ntBASIC18.31■□□□□ 0.52
LIME1Q9H400 AC112229.1-201ENST00000639295 961 ntBASIC18.31■□□□□ 0.52
LIME1Q9H400 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.31■□□□□ 0.52
LIME1Q9H400 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.31■□□□□ 0.52
LIME1Q9H400 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.31■□□□□ 0.52
LIME1Q9H400 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIME1Q9H400 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.31■□□□□ 0.52
LIME1Q9H400 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.31■□□□□ 0.52
LIME1Q9H400 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIME1Q9H400 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.3■□□□□ 0.52
LIME1Q9H400 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIME1Q9H400 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.3■□□□□ 0.52
LIME1Q9H400 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
LIME1Q9H400 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms