Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.36■□□□□ 0.53
VRK1Q99986 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.36■□□□□ 0.53
VRK1Q99986 AP004607.4-201ENST00000530158 1459 ntBASIC18.36■□□□□ 0.53
VRK1Q99986 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.36■□□□□ 0.53
VRK1Q99986 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.36■□□□□ 0.53
VRK1Q99986 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VRK1Q99986 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VRK1Q99986 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VRK1Q99986 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.35■□□□□ 0.53
VRK1Q99986 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VRK1Q99986 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.35■□□□□ 0.53
VRK1Q99986 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.35■□□□□ 0.53
VRK1Q99986 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.35■□□□□ 0.53
VRK1Q99986 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.35■□□□□ 0.53
VRK1Q99986 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
VRK1Q99986 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
VRK1Q99986 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
VRK1Q99986 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK1Q99986 AC005224.4-201ENST00000583262 1652 ntBASIC18.34■□□□□ 0.53
VRK1Q99986 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK1Q99986 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VRK1Q99986 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK1Q99986 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK1Q99986 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK1Q99986 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.34■□□□□ 0.53
VRK1Q99986 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.34■□□□□ 0.53
VRK1Q99986 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VRK1Q99986 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.34■□□□□ 0.53
VRK1Q99986 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.34■□□□□ 0.53
VRK1Q99986 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.34■□□□□ 0.53
VRK1Q99986 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.34■□□□□ 0.53
VRK1Q99986 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VRK1Q99986 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
VRK1Q99986 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK1Q99986 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VRK1Q99986 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VRK1Q99986 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VRK1Q99986 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK1Q99986 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VRK1Q99986 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.33■□□□□ 0.53
VRK1Q99986 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
VRK1Q99986 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
VRK1Q99986 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VRK1Q99986 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VRK1Q99986 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VRK1Q99986 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VRK1Q99986 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
VRK1Q99986 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VRK1Q99986 AC005229.4-201ENST00000610085 2198 ntBASIC18.33■□□□□ 0.52
VRK1Q99986 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.33■□□□□ 0.52
VRK1Q99986 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VRK1Q99986 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.33■□□□□ 0.52
VRK1Q99986 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.33■□□□□ 0.52
VRK1Q99986 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VRK1Q99986 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.33■□□□□ 0.52
VRK1Q99986 KRT18P61-201ENST00000585825 1298 ntBASIC18.33■□□□□ 0.52
VRK1Q99986 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.33■□□□□ 0.52
VRK1Q99986 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VRK1Q99986 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VRK1Q99986 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
VRK1Q99986 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VRK1Q99986 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VRK1Q99986 OR7E47P-201ENST00000546390 1422 ntBASIC18.32■□□□□ 0.52
VRK1Q99986 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.32■□□□□ 0.52
VRK1Q99986 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK1Q99986 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
VRK1Q99986 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK1Q99986 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VRK1Q99986 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK1Q99986 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.32■□□□□ 0.52
VRK1Q99986 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VRK1Q99986 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.32■□□□□ 0.52
VRK1Q99986 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.32■□□□□ 0.52
VRK1Q99986 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VRK1Q99986 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK1Q99986 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK1Q99986 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK1Q99986 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
VRK1Q99986 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK1Q99986 AP004607.7-201ENST00000527152 1677 ntBASIC18.31■□□□□ 0.52
VRK1Q99986 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK1Q99986 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.31■□□□□ 0.52
VRK1Q99986 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.31■□□□□ 0.52
VRK1Q99986 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK1Q99986 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
VRK1Q99986 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK1Q99986 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK1Q99986 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK1Q99986 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms