Protein–RNA interactions for Protein: Q96SZ6

CDK5RAP1, CDK5 regulatory subunit-associated protein 1, humanhuman

Known RBP Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP1Q96SZ6 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.74■■□□□ 1.07
CDK5RAP1Q96SZ6 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDK5RAP1Q96SZ6 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.74■■□□□ 1.07
CDK5RAP1Q96SZ6 AC083906.2-201ENST00000511578 360 ntBASIC21.74■■□□□ 1.07
CDK5RAP1Q96SZ6 AC104771.1-201ENST00000603335 964 ntBASIC21.74■■□□□ 1.07
CDK5RAP1Q96SZ6 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
CDK5RAP1Q96SZ6 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDK5RAP1Q96SZ6 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDK5RAP1Q96SZ6 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CDK5RAP1Q96SZ6 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CDK5RAP1Q96SZ6 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 SLC29A4P1-201ENST00000398760 971 ntBASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 CDV3P1-201ENST00000471403 739 ntBASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 AC244015.2-201ENST00000616358 1861 ntBASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDK5RAP1Q96SZ6 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 AL512625.2-201ENST00000417533 625 ntBASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 AC105036.2-201ENST00000569468 176 ntBASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.71■■□□□ 1.07
CDK5RAP1Q96SZ6 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.07
CDK5RAP1Q96SZ6 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 AC091799.1-201ENST00000422823 811 ntBASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 TSPY6P-201ENST00000448518 926 ntBASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.7■■□□□ 1.06
CDK5RAP1Q96SZ6 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CDK5RAP1Q96SZ6 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDK5RAP1Q96SZ6 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
CDK5RAP1Q96SZ6 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms