Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLIP3Q96DZ5 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLIP3Q96DZ5 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLIP3Q96DZ5 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.81
CLIP3Q96DZ5 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
CLIP3Q96DZ5 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.08■□□□□ 0.81
CLIP3Q96DZ5 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.08■□□□□ 0.81
CLIP3Q96DZ5 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.08■□□□□ 0.8
CLIP3Q96DZ5 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
CLIP3Q96DZ5 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.08■□□□□ 0.8
CLIP3Q96DZ5 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLIP3Q96DZ5 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
CLIP3Q96DZ5 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 AC092053.2-201ENST00000640557 1818 ntBASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 AL121832.2-201ENST00000610979 668 ntBASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
CLIP3Q96DZ5 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.06■□□□□ 0.8
CLIP3Q96DZ5 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 AC083906.2-201ENST00000511578 360 ntBASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 SLC7A5P1-201ENST00000568957 537 ntBASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 AL050303.2-201ENST00000619798 666 ntBASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.05■□□□□ 0.8
CLIP3Q96DZ5 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 POU5F1P4-201ENST00000413175 1085 ntBASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 TERF1P5-201ENST00000477545 1207 ntBASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP3Q96DZ5 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 AC013268.1-206ENST00000638368 961 ntBASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 AC112229.1-201ENST00000639295 961 ntBASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLIP3Q96DZ5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 CNN2P6-201ENST00000439038 900 ntBASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms