Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.09■■□□□ 1.29
PEX3P56589 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
PEX3P56589 AC010536.3-201ENST00000620306 533 ntBASIC23.09■■□□□ 1.29
PEX3P56589 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PEX3P56589 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PEX3P56589 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PEX3P56589 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PEX3P56589 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
PEX3P56589 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PEX3P56589 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.08■■□□□ 1.29
PEX3P56589 DUX4L16-201ENST00000555130 1264 ntBASIC23.08■■□□□ 1.29
PEX3P56589 AC073111.5-205ENST00000641717 521 ntBASIC23.08■■□□□ 1.29
PEX3P56589 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC23.08■■□□□ 1.29
PEX3P56589 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
PEX3P56589 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PEX3P56589 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PEX3P56589 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
PEX3P56589 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.08■■□□□ 1.28
PEX3P56589 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
PEX3P56589 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC23.07■■□□□ 1.28
PEX3P56589 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
PEX3P56589 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.07■■□□□ 1.28
PEX3P56589 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PEX3P56589 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PEX3P56589 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.06■■□□□ 1.28
PEX3P56589 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PEX3P56589 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PEX3P56589 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PEX3P56589 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.06■■□□□ 1.28
PEX3P56589 CDCA4P2-201ENST00000441182 718 ntBASIC23.06■■□□□ 1.28
PEX3P56589 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC23.06■■□□□ 1.28
PEX3P56589 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PEX3P56589 FGF8-207ENST00000618991 856 ntTSL 3 BASIC23.06■■□□□ 1.28
PEX3P56589 RARRES2P11-201ENST00000635158 484 ntBASIC23.06■■□□□ 1.28
PEX3P56589 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PEX3P56589 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
PEX3P56589 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PEX3P56589 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PEX3P56589 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.05■■□□□ 1.28
PEX3P56589 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.05■■□□□ 1.28
PEX3P56589 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.05■■□□□ 1.28
PEX3P56589 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.05■■□□□ 1.28
PEX3P56589 UQCRFS1P1-201ENST00000435169 820 ntBASIC23.05■■□□□ 1.28
PEX3P56589 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PEX3P56589 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
PEX3P56589 TERF1P5-201ENST00000477545 1207 ntBASIC23.05■■□□□ 1.28
PEX3P56589 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
PEX3P56589 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PEX3P56589 RBM17P2-201ENST00000616397 1405 ntBASIC23.05■■□□□ 1.28
PEX3P56589 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.05■■□□□ 1.28
PEX3P56589 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
PEX3P56589 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PEX3P56589 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PEX3P56589 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.04■■□□□ 1.28
PEX3P56589 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PEX3P56589 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PEX3P56589 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
PEX3P56589 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.04■■□□□ 1.28
PEX3P56589 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.04■■□□□ 1.28
PEX3P56589 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.04■■□□□ 1.28
PEX3P56589 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.04■■□□□ 1.28
PEX3P56589 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PEX3P56589 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.04■■□□□ 1.28
PEX3P56589 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC23.04■■□□□ 1.28
PEX3P56589 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.04■■□□□ 1.28
PEX3P56589 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
PEX3P56589 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.04■■□□□ 1.28
PEX3P56589 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PEX3P56589 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.04■■□□□ 1.28
PEX3P56589 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.04■■□□□ 1.28
PEX3P56589 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.04■■□□□ 1.28
PEX3P56589 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PEX3P56589 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PEX3P56589 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC23.04■■□□□ 1.28
PEX3P56589 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PEX3P56589 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
PEX3P56589 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PEX3P56589 METTL26-203ENST00000397664 604 ntTSL 2 BASIC23.03■■□□□ 1.28
PEX3P56589 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.03■■□□□ 1.28
PEX3P56589 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.03■■□□□ 1.28
PEX3P56589 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
PEX3P56589 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PEX3P56589 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PEX3P56589 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PEX3P56589 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms