Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA3P55318 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA3P55318 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 NKILA-201ENST00000613231 537 ntTSL 4 BASIC15.66■□□□□ 0.1
FOXA3P55318 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXA3P55318 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
FOXA3P55318 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
FOXA3P55318 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
FOXA3P55318 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA3P55318 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA3P55318 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA3P55318 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
FOXA3P55318 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
FOXA3P55318 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA3P55318 RARRES2P2-201ENST00000394842 485 ntBASIC15.65■□□□□ 0.1
FOXA3P55318 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC15.65■□□□□ 0.1
FOXA3P55318 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA3P55318 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
FOXA3P55318 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC15.65■□□□□ 0.1
FOXA3P55318 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC15.65■□□□□ 0.1
FOXA3P55318 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA3P55318 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA3P55318 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA3P55318 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
FOXA3P55318 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA3P55318 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA3P55318 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA3P55318 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
FOXA3P55318 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA3P55318 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA3P55318 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
FOXA3P55318 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA3P55318 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA3P55318 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA3P55318 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
FOXA3P55318 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA3P55318 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA3P55318 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA3P55318 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
FOXA3P55318 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXA3P55318 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
FOXA3P55318 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA3P55318 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
FOXA3P55318 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
FOXA3P55318 STX6-204ENST00000542060 4809 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXA3P55318 AC009102.2-201ENST00000606772 1639 ntBASIC15.64■□□□□ 0.09
FOXA3P55318 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA3P55318 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.64■□□□□ 0.09
FOXA3P55318 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA3P55318 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA3P55318 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA3P55318 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA3P55318 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 ERF-202ENST00000440177 2032 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA3P55318 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 BEX3-202ENST00000372634 753 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA3P55318 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 SENP5-202ENST00000419026 973 ntTSL 3 BASIC15.63■□□□□ 0.09
FOXA3P55318 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
FOXA3P55318 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA3P55318 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 VGF-203ENST00000611537 1622 ntTSL 5 BASIC15.62■□□□□ 0.09
FOXA3P55318 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC15.62■□□□□ 0.09
FOXA3P55318 AC137630.3-201ENST00000607245 391 ntBASIC15.62■□□□□ 0.09
FOXA3P55318 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
FOXA3P55318 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
FOXA3P55318 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
FOXA3P55318 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
FOXA3P55318 PLK5-205ENST00000642079 1969 ntBASIC15.62■□□□□ 0.09
FOXA3P55318 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA3P55318 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms