Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC01006-201ENST00000333319 2292 ntBASIC21.81■■□□□ 1.08
LIG3P49916 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.81■■□□□ 1.08
LIG3P49916 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
LIG3P49916 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
LIG3P49916 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.8■■□□□ 1.08
LIG3P49916 AC027612.3-201ENST00000413684 1047 ntBASIC21.8■■□□□ 1.08
LIG3P49916 YBX1P1-201ENST00000445822 960 ntBASIC21.8■■□□□ 1.08
LIG3P49916 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 MIR5787-201ENST00000611784 55 ntBASIC21.8■■□□□ 1.08
LIG3P49916 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 OXCT2P1-201ENST00000447263 1535 ntBASIC21.8■■□□□ 1.08
LIG3P49916 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIG3P49916 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
LIG3P49916 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIG3P49916 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIG3P49916 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIG3P49916 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIG3P49916 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.79■■□□□ 1.08
LIG3P49916 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.79■■□□□ 1.08
LIG3P49916 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.79■■□□□ 1.08
LIG3P49916 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.79■■□□□ 1.08
LIG3P49916 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.79■■□□□ 1.08
LIG3P49916 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIG3P49916 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIG3P49916 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIG3P49916 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIG3P49916 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
LIG3P49916 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.79■■□□□ 1.08
LIG3P49916 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIG3P49916 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIG3P49916 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.78■■□□□ 1.08
LIG3P49916 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIG3P49916 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIG3P49916 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.78■■□□□ 1.08
LIG3P49916 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIG3P49916 AL020996.1-203ENST00000536896 2307 ntBASIC21.78■■□□□ 1.08
LIG3P49916 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIG3P49916 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIG3P49916 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIG3P49916 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.78■■□□□ 1.08
LIG3P49916 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIG3P49916 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.78■■□□□ 1.08
LIG3P49916 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIG3P49916 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.78■■□□□ 1.08
LIG3P49916 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIG3P49916 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.77■■□□□ 1.08
LIG3P49916 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIG3P49916 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIG3P49916 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.77■■□□□ 1.08
LIG3P49916 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIG3P49916 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIG3P49916 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
LIG3P49916 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIG3P49916 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.77■■□□□ 1.08
LIG3P49916 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.77■■□□□ 1.08
LIG3P49916 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.77■■□□□ 1.08
LIG3P49916 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.77■■□□□ 1.08
LIG3P49916 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIG3P49916 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
LIG3P49916 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
LIG3P49916 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.77■■□□□ 1.08
LIG3P49916 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIG3P49916 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
LIG3P49916 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
LIG3P49916 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
LIG3P49916 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIG3P49916 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIG3P49916 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
LIG3P49916 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.76■■□□□ 1.07
LIG3P49916 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIG3P49916 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.76■■□□□ 1.07
LIG3P49916 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.76■■□□□ 1.07
LIG3P49916 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIG3P49916 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIG3P49916 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIG3P49916 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
LIG3P49916 AC087289.5-201ENST00000586076 3175 ntBASIC21.76■■□□□ 1.07
LIG3P49916 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIG3P49916 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIG3P49916 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.76■■□□□ 1.07
LIG3P49916 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
LIG3P49916 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIG3P49916 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
LIG3P49916 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
LIG3P49916 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LIG3P49916 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIG3P49916 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIG3P49916 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.75■■□□□ 1.07
LIG3P49916 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms