Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.24■□□□□ 0.83
HNF4AP41235 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HNF4AP41235 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.24■□□□□ 0.83
HNF4AP41235 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.23■□□□□ 0.83
HNF4AP41235 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
HNF4AP41235 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.23■□□□□ 0.83
HNF4AP41235 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HNF4AP41235 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 MIR6821-201ENST00000617625 74 ntBASIC20.23■□□□□ 0.83
HNF4AP41235 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
HNF4AP41235 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.23■□□□□ 0.83
HNF4AP41235 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
HNF4AP41235 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HNF4AP41235 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HNF4AP41235 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HNF4AP41235 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HNF4AP41235 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HNF4AP41235 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.22■□□□□ 0.83
HNF4AP41235 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HNF4AP41235 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HNF4AP41235 AC026271.2-201ENST00000428091 497 ntBASIC20.22■□□□□ 0.83
HNF4AP41235 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.22■□□□□ 0.83
HNF4AP41235 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.22■□□□□ 0.83
HNF4AP41235 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.22■□□□□ 0.83
HNF4AP41235 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HNF4AP41235 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HNF4AP41235 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HNF4AP41235 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.21■□□□□ 0.83
HNF4AP41235 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HNF4AP41235 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
HNF4AP41235 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HNF4AP41235 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.21■□□□□ 0.83
HNF4AP41235 DUX4L2-201ENST00000561772 1275 ntBASIC20.21■□□□□ 0.83
HNF4AP41235 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HNF4AP41235 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.21■□□□□ 0.83
HNF4AP41235 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.21■□□□□ 0.83
HNF4AP41235 DUX4L6-201ENST00000626483 1275 ntBASIC20.21■□□□□ 0.83
HNF4AP41235 DUX4L1-201ENST00000627662 1275 ntBASIC20.21■□□□□ 0.83
HNF4AP41235 DUX4L8-201ENST00000629013 1275 ntBASIC20.21■□□□□ 0.83
HNF4AP41235 DUX4L3-201ENST00000630187 1275 ntBASIC20.21■□□□□ 0.83
HNF4AP41235 DUX4L7-201ENST00000630678 1275 ntBASIC20.21■□□□□ 0.83
HNF4AP41235 DUX4L5-201ENST00000630834 1275 ntBASIC20.21■□□□□ 0.83
HNF4AP41235 KRT87P-202ENST00000534226 1464 ntBASIC20.21■□□□□ 0.83
HNF4AP41235 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
HNF4AP41235 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HNF4AP41235 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
HNF4AP41235 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.2■□□□□ 0.82
HNF4AP41235 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HNF4AP41235 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.2■□□□□ 0.82
HNF4AP41235 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HNF4AP41235 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
HNF4AP41235 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.2■□□□□ 0.82
HNF4AP41235 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.2■□□□□ 0.82
HNF4AP41235 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.2■□□□□ 0.82
HNF4AP41235 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.2■□□□□ 0.82
HNF4AP41235 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HNF4AP41235 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HNF4AP41235 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HNF4AP41235 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HNF4AP41235 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HNF4AP41235 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HNF4AP41235 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HNF4AP41235 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
HNF4AP41235 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HNF4AP41235 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HNF4AP41235 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.19■□□□□ 0.82
HNF4AP41235 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
HNF4AP41235 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.19■□□□□ 0.82
HNF4AP41235 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HNF4AP41235 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HNF4AP41235 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
HNF4AP41235 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.19■□□□□ 0.82
HNF4AP41235 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HNF4AP41235 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HNF4AP41235 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.19■□□□□ 0.82
HNF4AP41235 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HNF4AP41235 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HNF4AP41235 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.19■□□□□ 0.82
HNF4AP41235 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HNF4AP41235 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
HNF4AP41235 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HNF4AP41235 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.18■□□□□ 0.82
HNF4AP41235 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
HNF4AP41235 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HNF4AP41235 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HNF4AP41235 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.18■□□□□ 0.82
HNF4AP41235 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HNF4AP41235 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.18■□□□□ 0.82
HNF4AP41235 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
HNF4AP41235 AC034268.1-201ENST00000441047 882 ntBASIC20.18■□□□□ 0.82
HNF4AP41235 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms