Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC35.43■■■■□ 3.26
CUX1P39880 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
CUX1P39880 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
CUX1P39880 MIR718-201ENST00000390190 70 ntBASIC35.43■■■■□ 3.26
CUX1P39880 SAPCD2P1-201ENST00000395413 1184 ntBASIC35.43■■■■□ 3.26
CUX1P39880 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC35.43■■■■□ 3.26
CUX1P39880 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC35.43■■■■□ 3.26
CUX1P39880 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC35.43■■■■□ 3.26
CUX1P39880 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
CUX1P39880 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC35.43■■■■□ 3.26
CUX1P39880 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
CUX1P39880 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC35.42■■■■□ 3.26
CUX1P39880 RN7SL471P-201ENST00000580476 299 ntBASIC35.42■■■■□ 3.26
CUX1P39880 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
CUX1P39880 GCK-205ENST00000437084 1385 ntTSL 5 BASIC35.42■■■■□ 3.26
CUX1P39880 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC35.42■■■■□ 3.26
CUX1P39880 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC35.42■■■■□ 3.26
CUX1P39880 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
CUX1P39880 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
CUX1P39880 CDV3P1-201ENST00000471403 739 ntBASIC35.42■■■■□ 3.26
CUX1P39880 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC35.42■■■■□ 3.26
CUX1P39880 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC35.42■■■■□ 3.26
CUX1P39880 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC35.41■■■■□ 3.26
CUX1P39880 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
CUX1P39880 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
CUX1P39880 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
CUX1P39880 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC35.41■■■■□ 3.26
CUX1P39880 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC35.41■■■■□ 3.26
CUX1P39880 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC35.41■■■■□ 3.26
CUX1P39880 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
CUX1P39880 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC35.41■■■■□ 3.26
CUX1P39880 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC35.4■■■■□ 3.26
CUX1P39880 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
CUX1P39880 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
CUX1P39880 PTPA-214ENST00000423100 988 ntTSL 2 BASIC35.4■■■■□ 3.26
CUX1P39880 GXYLT1P3-201ENST00000453058 1193 ntBASIC35.4■■■■□ 3.26
CUX1P39880 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC35.4■■■■□ 3.26
CUX1P39880 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC35.4■■■■□ 3.26
CUX1P39880 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
CUX1P39880 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
CUX1P39880 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC35.4■■■■□ 3.26
CUX1P39880 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC35.39■■■■□ 3.26
CUX1P39880 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
CUX1P39880 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC35.39■■■■□ 3.26
CUX1P39880 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC35.39■■■■□ 3.26
CUX1P39880 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC35.39■■■■□ 3.26
CUX1P39880 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC35.39■■■■□ 3.26
CUX1P39880 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC35.39■■■■□ 3.26
CUX1P39880 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC35.39■■■■□ 3.26
CUX1P39880 AC105020.6-201ENST00000621523 1217 ntBASIC35.39■■■■□ 3.26
CUX1P39880 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
CUX1P39880 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC35.38■■■■□ 3.26
CUX1P39880 ECEL1P3-201ENST00000427961 737 ntBASIC35.38■■■■□ 3.25
CUX1P39880 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC35.38■■■■□ 3.25
CUX1P39880 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC35.38■■■■□ 3.25
CUX1P39880 CYP21A1P-202ENST00000354927 1481 ntBASIC35.38■■■■□ 3.25
CUX1P39880 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC35.37■■■■□ 3.25
CUX1P39880 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC35.37■■■■□ 3.25
CUX1P39880 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
CUX1P39880 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC35.37■■■■□ 3.25
CUX1P39880 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
CUX1P39880 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC35.37■■■■□ 3.25
CUX1P39880 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
CUX1P39880 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
CUX1P39880 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
CUX1P39880 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
CUX1P39880 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC35.36■■■■□ 3.25
CUX1P39880 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
CUX1P39880 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC35.36■■■■□ 3.25
CUX1P39880 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
CUX1P39880 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
CUX1P39880 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC35.35■■■■□ 3.25
CUX1P39880 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC35.35■■■■□ 3.25
CUX1P39880 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC35.35■■■■□ 3.25
CUX1P39880 AC007322.3-201ENST00000426526 701 ntBASIC35.35■■■■□ 3.25
CUX1P39880 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC35.35■■■■□ 3.25
CUX1P39880 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC35.35■■■■□ 3.25
CUX1P39880 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC35.34■■■■□ 3.25
CUX1P39880 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC35.34■■■■□ 3.25
CUX1P39880 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
CUX1P39880 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC35.34■■■■□ 3.25
CUX1P39880 KRT17P3-201ENST00000420566 1262 ntBASIC35.34■■■■□ 3.25
CUX1P39880 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC35.34■■■■□ 3.25
CUX1P39880 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC35.34■■■■□ 3.25
CUX1P39880 REXO2-216ENST00000544196 452 ntTSL 3 BASIC35.34■■■■□ 3.25
CUX1P39880 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC35.34■■■■□ 3.25
CUX1P39880 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC35.34■■■■□ 3.25
CUX1P39880 AC068473.5-201ENST00000616428 2072 ntBASIC35.34■■■■□ 3.25
CUX1P39880 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
CUX1P39880 AC012618.2-201ENST00000428058 849 ntBASIC35.33■■■■□ 3.25
CUX1P39880 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC35.33■■■■□ 3.25
CUX1P39880 OR2A1-AS1-207ENST00000486094 819 ntBASIC35.33■■■■□ 3.25
CUX1P39880 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC35.33■■■■□ 3.25
CUX1P39880 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
CUX1P39880 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
CUX1P39880 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC35.33■■■■□ 3.25
CUX1P39880 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC35.33■■■■□ 3.25
CUX1P39880 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
CUX1P39880 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC35.32■■■■□ 3.25
CUX1P39880 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC35.32■■■■□ 3.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms