Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.3■■□□□ 1.48
CTDNEP1O95476 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.3■■□□□ 1.48
CTDNEP1O95476 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.3■■□□□ 1.48
CTDNEP1O95476 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CTDNEP1O95476 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CTDNEP1O95476 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.3■■□□□ 1.48
CTDNEP1O95476 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC24.3■■□□□ 1.48
CTDNEP1O95476 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CTDNEP1O95476 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
CTDNEP1O95476 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CTDNEP1O95476 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CTDNEP1O95476 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC24.3■■□□□ 1.48
CTDNEP1O95476 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CTDNEP1O95476 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
CTDNEP1O95476 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC24.29■■□□□ 1.48
CTDNEP1O95476 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
CTDNEP1O95476 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CTDNEP1O95476 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CTDNEP1O95476 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CTDNEP1O95476 AC010141.2-201ENST00000452426 721 ntBASIC24.29■■□□□ 1.48
CTDNEP1O95476 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC24.29■■□□□ 1.48
CTDNEP1O95476 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CTDNEP1O95476 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CTDNEP1O95476 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC24.29■■□□□ 1.48
CTDNEP1O95476 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CTDNEP1O95476 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.28■■□□□ 1.48
CTDNEP1O95476 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
CTDNEP1O95476 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC24.28■■□□□ 1.48
CTDNEP1O95476 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.28■■□□□ 1.48
CTDNEP1O95476 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CTDNEP1O95476 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC24.28■■□□□ 1.48
CTDNEP1O95476 DUX4L2-201ENST00000561772 1275 ntBASIC24.28■■□□□ 1.48
CTDNEP1O95476 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.28■■□□□ 1.48
CTDNEP1O95476 DUX4L6-201ENST00000626483 1275 ntBASIC24.28■■□□□ 1.48
CTDNEP1O95476 DUX4L1-201ENST00000627662 1275 ntBASIC24.28■■□□□ 1.48
CTDNEP1O95476 DUX4L8-201ENST00000629013 1275 ntBASIC24.28■■□□□ 1.48
CTDNEP1O95476 DUX4L3-201ENST00000630187 1275 ntBASIC24.28■■□□□ 1.48
CTDNEP1O95476 DUX4L7-201ENST00000630678 1275 ntBASIC24.28■■□□□ 1.48
CTDNEP1O95476 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CTDNEP1O95476 DUX4L5-201ENST00000630834 1275 ntBASIC24.28■■□□□ 1.48
CTDNEP1O95476 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
CTDNEP1O95476 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CTDNEP1O95476 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CTDNEP1O95476 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CTDNEP1O95476 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
CTDNEP1O95476 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC24.27■■□□□ 1.48
CTDNEP1O95476 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC24.27■■□□□ 1.48
CTDNEP1O95476 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CTDNEP1O95476 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CTDNEP1O95476 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
CTDNEP1O95476 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.27■■□□□ 1.48
CTDNEP1O95476 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CTDNEP1O95476 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CTDNEP1O95476 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.27■■□□□ 1.48
CTDNEP1O95476 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CTDNEP1O95476 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.27■■□□□ 1.48
CTDNEP1O95476 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC24.27■■□□□ 1.48
CTDNEP1O95476 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.27■■□□□ 1.48
CTDNEP1O95476 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.27■■□□□ 1.48
CTDNEP1O95476 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
CTDNEP1O95476 EXOC3-AS1-202ENST00000623673 1663 ntBASIC24.27■■□□□ 1.48
CTDNEP1O95476 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CTDNEP1O95476 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CTDNEP1O95476 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
CTDNEP1O95476 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CTDNEP1O95476 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CTDNEP1O95476 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
CTDNEP1O95476 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
CTDNEP1O95476 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
CTDNEP1O95476 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CTDNEP1O95476 HACD1-201ENST00000326961 773 ntTSL 2 BASIC24.26■■□□□ 1.47
CTDNEP1O95476 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC24.26■■□□□ 1.47
CTDNEP1O95476 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
CTDNEP1O95476 SLC7A5P2-201ENST00000553010 536 ntBASIC24.26■■□□□ 1.47
CTDNEP1O95476 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
CTDNEP1O95476 ERF-202ENST00000440177 2032 ntTSL 2 BASIC24.26■■□□□ 1.47
CTDNEP1O95476 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.26■■□□□ 1.47
CTDNEP1O95476 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CTDNEP1O95476 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC24.26■■□□□ 1.47
CTDNEP1O95476 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CTDNEP1O95476 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CTDNEP1O95476 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CTDNEP1O95476 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC24.25■■□□□ 1.47
CTDNEP1O95476 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC24.25■■□□□ 1.47
CTDNEP1O95476 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.25■■□□□ 1.47
CTDNEP1O95476 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CTDNEP1O95476 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
CTDNEP1O95476 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CTDNEP1O95476 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.25■■□□□ 1.47
CTDNEP1O95476 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CTDNEP1O95476 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.25■■□□□ 1.47
CTDNEP1O95476 RARRES2P11-201ENST00000635158 484 ntBASIC24.25■■□□□ 1.47
CTDNEP1O95476 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CTDNEP1O95476 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CTDNEP1O95476 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CTDNEP1O95476 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
CTDNEP1O95476 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
CTDNEP1O95476 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC24.25■■□□□ 1.47
CTDNEP1O95476 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CTDNEP1O95476 AC006128.1-201ENST00000624704 1661 ntBASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms