Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.71■□□□□ 0.59
UPK3AO75631 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.71■□□□□ 0.59
UPK3AO75631 EEF1DP3-203ENST00000566025 782 ntBASIC18.71■□□□□ 0.59
UPK3AO75631 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.71■□□□□ 0.59
UPK3AO75631 MIR5787-201ENST00000611784 55 ntBASIC18.71■□□□□ 0.59
UPK3AO75631 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPK3AO75631 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPK3AO75631 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPK3AO75631 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPK3AO75631 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPK3AO75631 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPK3AO75631 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
UPK3AO75631 AP004607.4-201ENST00000530158 1459 ntBASIC18.71■□□□□ 0.59
UPK3AO75631 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.7■□□□□ 0.58
UPK3AO75631 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
UPK3AO75631 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UPK3AO75631 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
UPK3AO75631 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UPK3AO75631 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.7■□□□□ 0.58
UPK3AO75631 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UPK3AO75631 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.7■□□□□ 0.58
UPK3AO75631 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UPK3AO75631 KRT18P61-201ENST00000585825 1298 ntBASIC18.7■□□□□ 0.58
UPK3AO75631 NTF6G-201ENST00000591094 616 ntBASIC18.7■□□□□ 0.58
UPK3AO75631 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UPK3AO75631 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
UPK3AO75631 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.7■□□□□ 0.58
UPK3AO75631 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
UPK3AO75631 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UPK3AO75631 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPK3AO75631 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPK3AO75631 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPK3AO75631 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.69■□□□□ 0.58
UPK3AO75631 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.69■□□□□ 0.58
UPK3AO75631 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.69■□□□□ 0.58
UPK3AO75631 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.69■□□□□ 0.58
UPK3AO75631 AC053503.5-201ENST00000601508 636 ntBASIC18.69■□□□□ 0.58
UPK3AO75631 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.69■□□□□ 0.58
UPK3AO75631 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.69■□□□□ 0.58
UPK3AO75631 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPK3AO75631 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPK3AO75631 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPK3AO75631 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPK3AO75631 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.69■□□□□ 0.58
UPK3AO75631 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UPK3AO75631 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPK3AO75631 PKD1P6-201ENST00000343738 4769 ntBASIC18.69■□□□□ 0.58
UPK3AO75631 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.69■□□□□ 0.58
UPK3AO75631 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.68■□□□□ 0.58
UPK3AO75631 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.68■□□□□ 0.58
UPK3AO75631 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.68■□□□□ 0.58
UPK3AO75631 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.68■□□□□ 0.58
UPK3AO75631 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.68■□□□□ 0.58
UPK3AO75631 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.68■□□□□ 0.58
UPK3AO75631 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.68■□□□□ 0.58
UPK3AO75631 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.68■□□□□ 0.58
UPK3AO75631 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.68■□□□□ 0.58
UPK3AO75631 AC104187.1-201ENST00000607510 612 ntBASIC18.68■□□□□ 0.58
UPK3AO75631 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
UPK3AO75631 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.68■□□□□ 0.58
UPK3AO75631 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 AL049796.1-201ENST00000565336 1766 ntBASIC18.68■□□□□ 0.58
UPK3AO75631 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPK3AO75631 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
UPK3AO75631 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UPK3AO75631 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UPK3AO75631 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.67■□□□□ 0.58
UPK3AO75631 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
UPK3AO75631 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UPK3AO75631 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
UPK3AO75631 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UPK3AO75631 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.67■□□□□ 0.58
UPK3AO75631 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.67■□□□□ 0.58
UPK3AO75631 KRT18P5-201ENST00000436075 1291 ntBASIC18.67■□□□□ 0.58
UPK3AO75631 AL162430.1-201ENST00000480705 870 ntBASIC18.67■□□□□ 0.58
UPK3AO75631 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.67■□□□□ 0.58
UPK3AO75631 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UPK3AO75631 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UPK3AO75631 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UPK3AO75631 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 284 ms