Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NEFHP1-201ENST00000412845 2629 ntBASIC21■□□□□ 0.95
SHOX2O60902 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21■□□□□ 0.95
SHOX2O60902 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHOX2O60902 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21■□□□□ 0.95
SHOX2O60902 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHOX2O60902 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
SHOX2O60902 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHOX2O60902 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHOX2O60902 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
SHOX2O60902 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHOX2O60902 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHOX2O60902 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHOX2O60902 MIR4281-201ENST00000580852 62 ntBASIC20.99■□□□□ 0.95
SHOX2O60902 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.99■□□□□ 0.95
SHOX2O60902 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.99■□□□□ 0.95
SHOX2O60902 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHOX2O60902 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHOX2O60902 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.99■□□□□ 0.95
SHOX2O60902 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.99■□□□□ 0.95
SHOX2O60902 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.99■□□□□ 0.95
SHOX2O60902 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SHOX2O60902 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SHOX2O60902 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHOX2O60902 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.98■□□□□ 0.95
SHOX2O60902 AC121338.2-201ENST00000622535 1744 ntBASIC20.98■□□□□ 0.95
SHOX2O60902 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHOX2O60902 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHOX2O60902 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHOX2O60902 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHOX2O60902 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHOX2O60902 AL158211.5-201ENST00000623583 2518 ntBASIC20.98■□□□□ 0.95
SHOX2O60902 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.98■□□□□ 0.95
SHOX2O60902 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHOX2O60902 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.98■□□□□ 0.95
SHOX2O60902 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHOX2O60902 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.98■□□□□ 0.95
SHOX2O60902 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHOX2O60902 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.98■□□□□ 0.95
SHOX2O60902 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.98■□□□□ 0.95
SHOX2O60902 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHOX2O60902 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.98■□□□□ 0.95
SHOX2O60902 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SHOX2O60902 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHOX2O60902 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHOX2O60902 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHOX2O60902 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.97■□□□□ 0.95
SHOX2O60902 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.97■□□□□ 0.95
SHOX2O60902 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
SHOX2O60902 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHOX2O60902 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHOX2O60902 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.97■□□□□ 0.95
SHOX2O60902 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.97■□□□□ 0.95
SHOX2O60902 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.97■□□□□ 0.95
SHOX2O60902 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHOX2O60902 AC005082.1-201ENST00000413042 2259 ntBASIC20.97■□□□□ 0.95
SHOX2O60902 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHOX2O60902 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHOX2O60902 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.96■□□□□ 0.95
SHOX2O60902 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.96■□□□□ 0.95
SHOX2O60902 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.96■□□□□ 0.95
SHOX2O60902 THA1P-201ENST00000590384 1145 ntBASIC20.96■□□□□ 0.95
SHOX2O60902 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SHOX2O60902 AL031602.1-201ENST00000633169 911 ntBASIC20.96■□□□□ 0.95
SHOX2O60902 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHOX2O60902 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
SHOX2O60902 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.95■□□□□ 0.94
SHOX2O60902 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SHOX2O60902 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHOX2O60902 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
SHOX2O60902 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.95■□□□□ 0.94
SHOX2O60902 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHOX2O60902 SNX5-217ENST00000606557 1087 ntBASIC20.95■□□□□ 0.94
SHOX2O60902 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHOX2O60902 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
SHOX2O60902 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHOX2O60902 AC003102.1-202ENST00000563394 1796 ntBASIC20.95■□□□□ 0.94
SHOX2O60902 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 AC139795.1-202ENST00000500444 432 ntBASIC20.94■□□□□ 0.94
SHOX2O60902 AC019171.1-201ENST00000601251 1056 ntBASIC20.94■□□□□ 0.94
SHOX2O60902 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 364.8 ms