Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDX4O14627 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDX4O14627 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
CDX4O14627 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.36■□□□□ 0.85
CDX4O14627 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.36■□□□□ 0.85
CDX4O14627 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDX4O14627 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDX4O14627 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CDX4O14627 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.36■□□□□ 0.85
CDX4O14627 AC133561.5-201ENST00000635547 218 ntBASIC20.36■□□□□ 0.85
CDX4O14627 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.36■□□□□ 0.85
CDX4O14627 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.36■□□□□ 0.85
CDX4O14627 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDX4O14627 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDX4O14627 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDX4O14627 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.35■□□□□ 0.85
CDX4O14627 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CDX4O14627 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.35■□□□□ 0.85
CDX4O14627 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.35■□□□□ 0.85
CDX4O14627 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CDX4O14627 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX4O14627 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDX4O14627 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.34■□□□□ 0.85
CDX4O14627 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.34■□□□□ 0.85
CDX4O14627 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDX4O14627 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX4O14627 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CDX4O14627 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CDX4O14627 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX4O14627 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDX4O14627 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
CDX4O14627 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX4O14627 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.34■□□□□ 0.85
CDX4O14627 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.34■□□□□ 0.85
CDX4O14627 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.34■□□□□ 0.85
CDX4O14627 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.34■□□□□ 0.85
CDX4O14627 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.34■□□□□ 0.85
CDX4O14627 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.34■□□□□ 0.85
CDX4O14627 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.34■□□□□ 0.85
CDX4O14627 AC003102.1-202ENST00000563394 1796 ntBASIC20.34■□□□□ 0.85
CDX4O14627 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDX4O14627 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.33■□□□□ 0.85
CDX4O14627 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.33■□□□□ 0.85
CDX4O14627 AC087499.1-201ENST00000418141 1075 ntBASIC20.33■□□□□ 0.85
CDX4O14627 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.33■□□□□ 0.85
CDX4O14627 AC245052.3-201ENST00000450182 901 ntBASIC20.33■□□□□ 0.85
CDX4O14627 TSPY15P-201ENST00000457163 923 ntBASIC20.33■□□□□ 0.85
CDX4O14627 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.33■□□□□ 0.85
CDX4O14627 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.33■□□□□ 0.85
CDX4O14627 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.33■□□□□ 0.85
CDX4O14627 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CDX4O14627 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CDX4O14627 AL049637.2-201ENST00000641778 930 ntBASIC20.33■□□□□ 0.85
CDX4O14627 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDX4O14627 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.33■□□□□ 0.84
CDX4O14627 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
CDX4O14627 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.32■□□□□ 0.84
CDX4O14627 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.32■□□□□ 0.84
CDX4O14627 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.32■□□□□ 0.84
CDX4O14627 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CDX4O14627 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX4O14627 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
CDX4O14627 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
CDX4O14627 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.31■□□□□ 0.84
CDX4O14627 AC087742.1-201ENST00000575880 1738 ntBASIC20.31■□□□□ 0.84
CDX4O14627 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CDX4O14627 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX4O14627 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDX4O14627 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CDX4O14627 RCN1P1-201ENST00000400413 996 ntBASIC20.31■□□□□ 0.84
CDX4O14627 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.31■□□□□ 0.84
CDX4O14627 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.31■□□□□ 0.84
CDX4O14627 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX4O14627 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.31■□□□□ 0.84
CDX4O14627 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX4O14627 MTDHP1-201ENST00000605323 784 ntBASIC20.31■□□□□ 0.84
CDX4O14627 AC012306.2-201ENST00000609350 630 ntBASIC20.31■□□□□ 0.84
CDX4O14627 AC097493.4-201ENST00000641197 219 ntBASIC20.31■□□□□ 0.84
CDX4O14627 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms