Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.4■■□□□ 1.02
CBX4O00257 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.4■■□□□ 1.02
CBX4O00257 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CBX4O00257 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.4■■□□□ 1.02
CBX4O00257 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CBX4O00257 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CBX4O00257 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CBX4O00257 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CBX4O00257 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CBX4O00257 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.39■■□□□ 1.01
CBX4O00257 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.39■■□□□ 1.01
CBX4O00257 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.39■■□□□ 1.01
CBX4O00257 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CBX4O00257 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CBX4O00257 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CBX4O00257 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CBX4O00257 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CBX4O00257 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CBX4O00257 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.39■■□□□ 1.01
CBX4O00257 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.39■■□□□ 1.01
CBX4O00257 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
CBX4O00257 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CBX4O00257 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CBX4O00257 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CBX4O00257 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CBX4O00257 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CBX4O00257 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.38■■□□□ 1.01
CBX4O00257 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.38■■□□□ 1.01
CBX4O00257 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CBX4O00257 AC026185.1-201ENST00000445748 174 ntBASIC21.38■■□□□ 1.01
CBX4O00257 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
CBX4O00257 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.38■■□□□ 1.01
CBX4O00257 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.38■■□□□ 1.01
CBX4O00257 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.38■■□□□ 1.01
CBX4O00257 AC104771.1-201ENST00000603335 964 ntBASIC21.38■■□□□ 1.01
CBX4O00257 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CBX4O00257 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CBX4O00257 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CBX4O00257 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CBX4O00257 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.38■■□□□ 1.01
CBX4O00257 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CBX4O00257 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.38■■□□□ 1.01
CBX4O00257 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CBX4O00257 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.37■■□□□ 1.01
CBX4O00257 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.37■■□□□ 1.01
CBX4O00257 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.37■■□□□ 1.01
CBX4O00257 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.37■■□□□ 1.01
CBX4O00257 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.37■■□□□ 1.01
CBX4O00257 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
CBX4O00257 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
CBX4O00257 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CBX4O00257 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
CBX4O00257 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.36■■□□□ 1.01
CBX4O00257 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CBX4O00257 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CBX4O00257 CROCCP5-201ENST00000436658 830 ntBASIC21.36■■□□□ 1.01
CBX4O00257 TERF1P5-201ENST00000477545 1207 ntBASIC21.36■■□□□ 1.01
CBX4O00257 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.36■■□□□ 1.01
CBX4O00257 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.36■■□□□ 1.01
CBX4O00257 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.36■■□□□ 1.01
CBX4O00257 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
CBX4O00257 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CBX4O00257 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CBX4O00257 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CBX4O00257 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.36■■□□□ 1.01
CBX4O00257 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
CBX4O00257 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
CBX4O00257 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CBX4O00257 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CBX4O00257 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CBX4O00257 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
CBX4O00257 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CBX4O00257 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CBX4O00257 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.35■■□□□ 1.01
CBX4O00257 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
CBX4O00257 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.35■■□□□ 1.01
CBX4O00257 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.35■■□□□ 1.01
CBX4O00257 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.35■■□□□ 1.01
CBX4O00257 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.35■■□□□ 1.01
CBX4O00257 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.35■■□□□ 1.01
CBX4O00257 AC231657.2-201ENST00000624556 255 ntBASIC21.35■■□□□ 1.01
CBX4O00257 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CBX4O00257 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CBX4O00257 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.35■■□□□ 1.01
CBX4O00257 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.35■■□□□ 1.01
CBX4O00257 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CBX4O00257 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CBX4O00257 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CBX4O00257 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms