Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
AP4E1Q9UPM8 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 AL049796.1-201ENST00000565336 1766 ntBASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 AC010141.2-201ENST00000452426 721 ntBASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 KRT18P61-201ENST00000585825 1298 ntBASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 AC008175.2-201ENST00000612840 297 ntBASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
AP4E1Q9UPM8 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 AC034268.1-201ENST00000441047 882 ntBASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 RARRES2P6-201ENST00000567333 442 ntBASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.74■■□□□ 1.07
AP4E1Q9UPM8 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 POU5F1P4-201ENST00000413175 1085 ntBASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 AC026271.2-201ENST00000428091 497 ntBASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 AP001160.3-201ENST00000601484 763 ntBASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
AP4E1Q9UPM8 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.72■■□□□ 1.07
AP4E1Q9UPM8 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
AP4E1Q9UPM8 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
AP4E1Q9UPM8 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.7■■□□□ 1.07
AP4E1Q9UPM8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms