Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 KRT16P2-201ENST00000414673 1423 ntBASIC19.91■□□□□ 0.78
SCN3AQ9NY46 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.91■□□□□ 0.78
SCN3AQ9NY46 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 AC006015.1-201ENST00000429970 570 ntBASIC19.9■□□□□ 0.78
SCN3AQ9NY46 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN3AQ9NY46 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SCN3AQ9NY46 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN3AQ9NY46 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SCN3AQ9NY46 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN3AQ9NY46 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.89■□□□□ 0.77
SCN3AQ9NY46 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.89■□□□□ 0.77
SCN3AQ9NY46 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN3AQ9NY46 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SCN3AQ9NY46 AL024507.2-201ENST00000606070 2574 ntBASIC19.88■□□□□ 0.77
SCN3AQ9NY46 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN3AQ9NY46 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN3AQ9NY46 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 FEM1AP4-201ENST00000443167 1987 ntBASIC19.86■□□□□ 0.77
SCN3AQ9NY46 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.86■□□□□ 0.77
SCN3AQ9NY46 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 BID-214ENST00000617586 542 ntTSL 5 BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms