Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 AC080038.1-201ENST00000611274 1154 ntBASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 KRT16P2-201ENST00000414673 1423 ntBASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM39Q9HCM9 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM39Q9HCM9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM39Q9HCM9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.91
TRIM39Q9HCM9 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM39Q9HCM9 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
TRIM39Q9HCM9 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM39Q9HCM9 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
TRIM39Q9HCM9 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 MFSD11-216ENST00000590393 1141 ntBASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM39Q9HCM9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 RARRES2P11-201ENST00000635158 484 ntBASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 AL024507.2-201ENST00000606070 2574 ntBASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM39Q9HCM9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM39Q9HCM9 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 PKD1P6-201ENST00000343738 4769 ntBASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 FBXW4P1-201ENST00000426721 2239 ntBASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms