Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.51■□□□□ 0.55
SKA3Q8IX90 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA3Q8IX90 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA3Q8IX90 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA3Q8IX90 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SKA3Q8IX90 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.51■□□□□ 0.55
SKA3Q8IX90 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA3Q8IX90 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA3Q8IX90 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA3Q8IX90 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.51■□□□□ 0.55
SKA3Q8IX90 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SKA3Q8IX90 MIR935-201ENST00000401179 91 ntBASIC18.51■□□□□ 0.55
SKA3Q8IX90 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.51■□□□□ 0.55
SKA3Q8IX90 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SKA3Q8IX90 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.51■□□□□ 0.55
SKA3Q8IX90 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SKA3Q8IX90 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.51■□□□□ 0.55
SKA3Q8IX90 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SKA3Q8IX90 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA3Q8IX90 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SKA3Q8IX90 Z98882.1-201ENST00000622160 2253 ntBASIC18.51■□□□□ 0.55
SKA3Q8IX90 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 AC092667.1-201ENST00000434301 2586 ntBASIC18.5■□□□□ 0.55
SKA3Q8IX90 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 AP004607.4-201ENST00000530158 1459 ntBASIC18.5■□□□□ 0.55
SKA3Q8IX90 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.5■□□□□ 0.55
SKA3Q8IX90 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA3Q8IX90 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 AC004854.2-201ENST00000608450 1441 ntBASIC18.49■□□□□ 0.55
SKA3Q8IX90 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
SKA3Q8IX90 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.49■□□□□ 0.55
SKA3Q8IX90 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SKA3Q8IX90 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.49■□□□□ 0.55
SKA3Q8IX90 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.49■□□□□ 0.55
SKA3Q8IX90 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.49■□□□□ 0.55
SKA3Q8IX90 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.49■□□□□ 0.55
SKA3Q8IX90 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.49■□□□□ 0.55
SKA3Q8IX90 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA3Q8IX90 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SKA3Q8IX90 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SKA3Q8IX90 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SKA3Q8IX90 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SKA3Q8IX90 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SKA3Q8IX90 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SKA3Q8IX90 AC104187.1-201ENST00000607510 612 ntBASIC18.48■□□□□ 0.55
SKA3Q8IX90 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.48■□□□□ 0.55
SKA3Q8IX90 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SKA3Q8IX90 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SKA3Q8IX90 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.48■□□□□ 0.55
SKA3Q8IX90 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SKA3Q8IX90 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SKA3Q8IX90 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SKA3Q8IX90 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SKA3Q8IX90 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SKA3Q8IX90 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SKA3Q8IX90 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SKA3Q8IX90 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SKA3Q8IX90 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.47■□□□□ 0.55
SKA3Q8IX90 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.47■□□□□ 0.55
SKA3Q8IX90 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.47■□□□□ 0.55
SKA3Q8IX90 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.47■□□□□ 0.55
SKA3Q8IX90 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.47■□□□□ 0.55
SKA3Q8IX90 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms