Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 SLC29A4P1-201ENST00000398760 971 ntBASIC20.82■□□□□ 0.92
LRRK1Q38SD2 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 AC133552.2-202ENST00000575694 574 ntBASIC20.82■□□□□ 0.92
LRRK1Q38SD2 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.82■□□□□ 0.92
LRRK1Q38SD2 MKRN4P-201ENST00000444706 1521 ntBASIC20.81■□□□□ 0.92
LRRK1Q38SD2 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 AC142086.2-201ENST00000569753 217 ntBASIC20.81■□□□□ 0.92
LRRK1Q38SD2 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRK1Q38SD2 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 AL162412.1-201ENST00000567129 965 ntBASIC20.8■□□□□ 0.92
LRRK1Q38SD2 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRK1Q38SD2 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 AL121832.2-201ENST00000610979 668 ntBASIC20.79■□□□□ 0.92
LRRK1Q38SD2 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.79■□□□□ 0.92
LRRK1Q38SD2 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LRRK1Q38SD2 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 AL138781.1-201ENST00000566567 1274 ntBASIC20.77■□□□□ 0.92
LRRK1Q38SD2 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.77■□□□□ 0.92
LRRK1Q38SD2 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms