Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.7■■□□□ 1.06
IRX4P78413 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.7■■□□□ 1.06
IRX4P78413 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
IRX4P78413 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.7■■□□□ 1.06
IRX4P78413 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.7■■□□□ 1.06
IRX4P78413 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.7■■□□□ 1.06
IRX4P78413 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
IRX4P78413 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
IRX4P78413 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
IRX4P78413 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
IRX4P78413 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
IRX4P78413 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
IRX4P78413 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
IRX4P78413 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.7■■□□□ 1.06
IRX4P78413 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.7■■□□□ 1.06
IRX4P78413 AC004687.1-201ENST00000579003 1625 ntBASIC21.69■■□□□ 1.06
IRX4P78413 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.69■■□□□ 1.06
IRX4P78413 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
IRX4P78413 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
IRX4P78413 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
IRX4P78413 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
IRX4P78413 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
IRX4P78413 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
IRX4P78413 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
IRX4P78413 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
IRX4P78413 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
IRX4P78413 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
IRX4P78413 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
IRX4P78413 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
IRX4P78413 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.68■■□□□ 1.06
IRX4P78413 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.68■■□□□ 1.06
IRX4P78413 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.68■■□□□ 1.06
IRX4P78413 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.68■■□□□ 1.06
IRX4P78413 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.68■■□□□ 1.06
IRX4P78413 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.68■■□□□ 1.06
IRX4P78413 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.68■■□□□ 1.06
IRX4P78413 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
IRX4P78413 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
IRX4P78413 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
IRX4P78413 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.67■■□□□ 1.06
IRX4P78413 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
IRX4P78413 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.67■■□□□ 1.06
IRX4P78413 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
IRX4P78413 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.67■■□□□ 1.06
IRX4P78413 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
IRX4P78413 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
IRX4P78413 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
IRX4P78413 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
IRX4P78413 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
IRX4P78413 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
IRX4P78413 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
IRX4P78413 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
IRX4P78413 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
IRX4P78413 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
IRX4P78413 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.66■■□□□ 1.06
IRX4P78413 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.66■■□□□ 1.06
IRX4P78413 AC142086.2-201ENST00000569753 217 ntBASIC21.66■■□□□ 1.06
IRX4P78413 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.66■■□□□ 1.06
IRX4P78413 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
IRX4P78413 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
IRX4P78413 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.66■■□□□ 1.06
IRX4P78413 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
IRX4P78413 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
IRX4P78413 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.66■■□□□ 1.06
IRX4P78413 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
IRX4P78413 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
IRX4P78413 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
IRX4P78413 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
IRX4P78413 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
IRX4P78413 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.65■■□□□ 1.06
IRX4P78413 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
IRX4P78413 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
IRX4P78413 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.65■■□□□ 1.06
IRX4P78413 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
IRX4P78413 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
IRX4P78413 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms