Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.7■□□□□ 0.1
FOXA3P55318 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 OR7E47P-201ENST00000546390 1422 ntBASIC15.69■□□□□ 0.1
FOXA3P55318 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 AL499627.2-201ENST00000606283 725 ntBASIC15.69■□□□□ 0.1
FOXA3P55318 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA3P55318 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
FOXA3P55318 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA3P55318 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
FOXA3P55318 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA3P55318 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC15.68■□□□□ 0.1
FOXA3P55318 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
FOXA3P55318 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA3P55318 BHLHE23-202ENST00000612929 1109 ntBASIC15.68■□□□□ 0.1
FOXA3P55318 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA3P55318 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
FOXA3P55318 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA3P55318 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA3P55318 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
FOXA3P55318 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA3P55318 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
FOXA3P55318 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA3P55318 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA3P55318 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
FOXA3P55318 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA3P55318 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA3P55318 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA3P55318 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA3P55318 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA3P55318 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
FOXA3P55318 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA3P55318 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
FOXA3P55318 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
FOXA3P55318 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
FOXA3P55318 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA3P55318 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
FOXA3P55318 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA3P55318 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXA3P55318 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXA3P55318 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms