Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HADHAP40939 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HADHAP40939 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
HADHAP40939 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HADHAP40939 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HADHAP40939 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HADHAP40939 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.15■□□□□ 0.98
HADHAP40939 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.15■□□□□ 0.98
HADHAP40939 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HADHAP40939 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.15■□□□□ 0.98
HADHAP40939 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HADHAP40939 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HADHAP40939 AF106564.1-201ENST00000607058 2553 ntBASIC21.15■□□□□ 0.98
HADHAP40939 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HADHAP40939 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HADHAP40939 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HADHAP40939 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HADHAP40939 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HADHAP40939 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HADHAP40939 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HADHAP40939 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HADHAP40939 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HADHAP40939 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HADHAP40939 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HADHAP40939 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.14■□□□□ 0.97
HADHAP40939 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HADHAP40939 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HADHAP40939 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
HADHAP40939 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
HADHAP40939 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
HADHAP40939 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.14■□□□□ 0.97
HADHAP40939 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.14■□□□□ 0.97
HADHAP40939 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.14■□□□□ 0.97
HADHAP40939 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HADHAP40939 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
HADHAP40939 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
HADHAP40939 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HADHAP40939 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.14■□□□□ 0.97
HADHAP40939 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
HADHAP40939 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.13■□□□□ 0.97
HADHAP40939 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.13■□□□□ 0.97
HADHAP40939 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 TERF1P2-201ENST00000583350 1212 ntBASIC21.13■□□□□ 0.97
HADHAP40939 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.13■□□□□ 0.97
HADHAP40939 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.13■□□□□ 0.97
HADHAP40939 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HADHAP40939 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.13■□□□□ 0.97
HADHAP40939 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.13■□□□□ 0.97
HADHAP40939 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.13■□□□□ 0.97
HADHAP40939 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HADHAP40939 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HADHAP40939 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
HADHAP40939 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.12■□□□□ 0.97
HADHAP40939 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.12■□□□□ 0.97
HADHAP40939 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.12■□□□□ 0.97
HADHAP40939 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.12■□□□□ 0.97
HADHAP40939 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 KRT87P-202ENST00000534226 1464 ntBASIC21.12■□□□□ 0.97
HADHAP40939 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HADHAP40939 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.12■□□□□ 0.97
HADHAP40939 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
HADHAP40939 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.12■□□□□ 0.97
HADHAP40939 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HADHAP40939 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.11■□□□□ 0.97
HADHAP40939 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HADHAP40939 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.11■□□□□ 0.97
HADHAP40939 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HADHAP40939 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HADHAP40939 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HADHAP40939 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.11■□□□□ 0.97
HADHAP40939 AC026271.2-201ENST00000428091 497 ntBASIC21.11■□□□□ 0.97
HADHAP40939 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.11■□□□□ 0.97
HADHAP40939 AC053503.5-201ENST00000601508 636 ntBASIC21.11■□□□□ 0.97
HADHAP40939 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HADHAP40939 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.11■□□□□ 0.97
HADHAP40939 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HADHAP40939 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.11■□□□□ 0.97
HADHAP40939 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.1■□□□□ 0.97
HADHAP40939 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms